RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PEX6Q13608 980 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 ITGA9Q13797 1035 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 GUSBP11Q6P575 273 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 DHRS13Q6UX07 377 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 FAM151BQ6UXP7 276 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 MARK2Q7KZI7 788 aaKnown RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 GSTA5Q7RTV2 222 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 TMPRSS7Q7RTY8 843 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 PRUNE1Q86TP1 453 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 GALNT15Q8N3T1 639 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 NAT6Q93015 286 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 TRIM39Q9HCM9 518 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 EIF2B3Q9NR50 452 aaKnown RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 SIRPGQ9P1W8 387 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 ATXN10Q9UBB4 475 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 KLK13Q9UKR3 277 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 TMPRSS11EQ9UL52 423 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 GPSM3Q9Y4H4 160 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 MYLKQ15746 1914 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 PTPRBP23467 1997 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 LDB2O43679 373 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 PRAMEF1O95521 474 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 ZSCAN5DPP0CG00 497 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 MYF5P13349 255 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 SPINK2P20155 84 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 AK4P27144 223 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-208ENST00000532560 GNG11P61952 73 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 CTBSQ01459 385 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 CDH17Q12864 832 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 CHRNA6Q15825 494 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 OGFOD3Q6PK18 319 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 ADGRG6Q86SQ4 1221 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 TMPRSS12Q86WS5 348 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 FAM46DQ8NEK8 389 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 DDHD1Q8NEL9 900 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 GPR156Q8NFN8 814 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 OR13C4Q8NGS5 318 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 IFI44Q8TCB0 444 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 OR2AG1Q9H205 316 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 ARFGAP3Q9NP61 516 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 TAAR2Q9P1P5 351 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 APPL1Q9UKG1 709 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 PADI4Q9UM07 663 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 KCTD3Q9Y597 815 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 PCYT1BQ9Y5K3 369 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-208ENST00000532560 ST14Q9Y5Y6 855 aa14.88□□□□□ -0.03
CPSF1-208ENST00000532560 GOLGA6L10A0A0M3HER8 536 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 B4DGG1 531 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 CHUKO15111 745 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 GRID2O43424 1007 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 VEGFDO43915 354 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 NOBOXO60393 691 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 APRTP07741 180 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 ZNF8P17098 575 aaPredicted RBP14.87□□□□□ -0.03
CPSF1-208ENST00000532560 HADHAP40939 763 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 ACTR1BP42025 376 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 LMAN1P49257 510 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 ACTR1AP61163 376 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 PTPRCAPQ14761 206 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 POU6F1Q14863 301 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 KHDC1Q4VXA5 237 aaKnown RBP14.87□□□□□ -0.03
CPSF1-208ENST00000532560 LDLRAP1Q5SW96 308 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 PAPD7Q5XG87 772 aaKnown RBP14.87□□□□□ -0.03
CPSF1-208ENST00000532560 TTC27Q6P3X3 843 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 SLC30A9Q6PML9 568 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 PPP1R21Q6ZMI0 780 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 EFL1Q7Z2Z2 1120 aaKnown RBP14.87□□□□□ -0.03
CPSF1-208ENST00000532560 OR6C4Q8NGE1 309 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 OR52K1Q8NGK4 314 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 MAGOHBQ96A72 148 aaKnown RBP14.87□□□□□ -0.03
CPSF1-208ENST00000532560 AP1M1Q9BXS5 423 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 L2HGDHQ9H9P8 463 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 CASS4Q9NQ75 786 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 SPATS2LQ9NUQ6 558 aaKnown RBP14.87□□□□□ -0.03
CPSF1-208ENST00000532560 SMARCAL1Q9NZC9 954 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 GULP1Q9UBP9 304 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 ZNHIT2Q9UHR6 403 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 FKBPLQ9UIM3 349 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 MSRB2Q9Y3D2 182 aa14.87□□□□□ -0.03
CPSF1-208ENST00000532560 ZFC3H1O60293 1989 aaKnown RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 CPED1A4D0V7 1026 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 ZNF185O15231 689 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 GPR39O43194 453 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 OPA1O60313 960 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 PHF2O75151 1096 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 MTX2O75431 263 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 SRP72O76094 671 aaKnown RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 GAS8O95995 478 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 TPH1P17752 444 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 PSMA3P25788 255 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 COILP38432 576 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 FNTAP49354 379 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 BASP1P80723 227 aaKnown RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 XIAPP98170 497 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 INSM1Q01101 510 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 NFATC2Q13469 925 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 SEPT6Q14141 434 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 HLTFQ14527 1009 aaKnown RBP eCLIP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 C14orf28Q4W4Y0 310 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms