RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KRT81Q14533 505 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 TBRG1Q3YBR2 411 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 SPECC1Q5M775 1068 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 SLC9C2Q5TAH2 1124 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 SNRNP48Q6IEG0 339 aaKnown RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 Q6ZTC4 211 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 RTL10Q7L3V2 364 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 CADM3Q8N126 398 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 TSPYL6Q8N831 410 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 ST8SIA4Q92187 359 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 HVCN1Q96D96 273 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 HERC2P3Q9BVR0 1158 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 RMI1Q9H9A7 625 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 JMJD4Q9H9V9 463 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 PLEKHA2Q9HB19 425 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 CWC25Q9NXE8 425 aaPredicted RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 FZD10Q9ULW2 581 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 DTX4Q9Y2E6 619 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 COPG1Q9Y678 874 aaKnown RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 SLC4A4Q9Y6R1 1079 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 NAV3Q8IVL0 2385 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 SETD2Q9BYW2 2564 aaPredicted RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 ITIH6Q6UXX5 1313 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 MROH5Q6ZUA9 1318 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 SPEF2Q9C093 1822 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 FSD2A1L4K1 749 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 AGAP5A6NIR3 686 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 SAC3D1A6NKF1 404 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 BECN2A8MW95 431 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 INAFM1C9JVW0 142 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 RGS14O43566 566 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 TSPAN3O60637 253 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 PAPSS2O95340 614 aaPredicted RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 DCNP07585 359 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 ASNSP08243 561 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 IFIT1P09914 478 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 GP1BBP13224 206 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 CTNNB1P35222 781 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 GYG1P46976 350 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 NRIP1P48552 1158 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 PCYT1AP49585 367 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 NOVA1P51513 510 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 DSCR9P59020 149 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 RNASELQ05823 741 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 Q0VFX4 171 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 GPS2Q13227 327 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 TDGQ13569 410 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 LRRC24Q50LG9 513 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 ARL13AQ5H913 290 aaPredicted RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 DNTTIP2Q5QJE6 756 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 GPATCH4Q5T3I0 446 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 DCAF12L2Q5VW00 463 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 AAGABQ6PD74 315 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 DSTYKQ6XUX3 929 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 SYNE3Q6ZMZ3 975 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 RBM23Q86U06 439 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 CCDC25Q86WR0 208 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 FAM217AQ8IXS0 508 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 PTGR2Q8N8N7 351 aaPredicted RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 ENGASEQ8NFI3 743 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 LINS1Q8NG48 757 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 HDAC2Q92769 488 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 C12orf42Q96LP6 360 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 NECTIN4Q96NY8 510 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 YME1L1Q96TA2 773 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 WDR77Q9BQA1 342 aaPredicted RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 PAIP1Q9H074 479 aaKnown RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 SPATC1LQ9H0A9 340 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 S1PR5Q9H228 398 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 CATSPERBQ9H7T0 1116 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 ZNF304Q9HCX3 659 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 BLOC1S4Q9NUP1 217 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 ZHX1Q9UKY1 873 aaPredicted RBP4.03□□□□□ -1.76
CD44-235ENST00000532339 HSF4Q9ULV5 492 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 TBX20Q9UMR3 447 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 DUSP12Q9UNI6 340 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 PTGDR2Q9Y5Y4 395 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 SCN5AQ14524 2016 aa4.03□□□□□ -1.76
CD44-235ENST00000532339 A0A1B0GVT2 93 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 CAPN9O14815 690 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 KLK10O43240 276 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 CXCL10P02778 98 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 LCATP04180 440 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 CENPBP07199 599 aaPredicted RBP4.02□□□□□ -1.77
CD44-235ENST00000532339 LDHCP07864 332 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 PNPLA4P41247 253 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 SELENOVP59797 346 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ZP1P60852 638 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 BEX3Q00994 111 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 RHAGQ02094 409 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 CSTF1Q05048 431 aaKnown RBP4.02□□□□□ -1.77
CD44-235ENST00000532339 DSC1Q08554 894 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 CAMK1Q14012 370 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 GPNMBQ14956 572 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 FNBP1LQ5T0N5 605 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 STPG1Q5TH74 334 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 MZT2BQ6NZ67 158 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 DPP10Q8N608 796 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 FSIP1Q8NA03 581 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 TDRD5Q8NAT2 981 aaKnown RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms