RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PCSK7Q16549 785 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 HENMT1Q5T8I9 393 aaKnown RBP14.59□□□□□ -0.07
VPS28-215ENST00000531924 IYDQ6PHW0 289 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 NT5DC3Q86UY8 548 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 RFX6Q8HWS3 928 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 SLC35G2Q8TBE7 412 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 CEP41Q9BYV8 373 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 GPR63Q9BZJ6 419 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 CARD9Q9H257 536 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 OSGEPL1Q9H4B0 414 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 SARS2Q9NP81 518 aaKnown RBP14.59□□□□□ -0.07
VPS28-215ENST00000531924 TMEM9Q9P0T7 183 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 TBC1D29Q9UFV1 150 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 CNOT6Q9ULM6 557 aaKnown RBP14.59□□□□□ -0.07
VPS28-215ENST00000531924 NENFQ9UMX5 172 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 OAS3Q9Y6K5 1087 aaKnown RBP14.59□□□□□ -0.07
VPS28-215ENST00000531924 PIEZO2Q9H5I5 2752 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 KIR2DS5A0A0G2JLQ3 304 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 A0A0G2JNG1 304 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 SSU72P8A0A1W2PR75 194 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 FADS2P1A8MWK0 482 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 ZNF487B1APH4 448 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 B4E171 279 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 KIR2DS3K7RE56 304 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 MTA2O94776 668 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 EML2O95834 649 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 MMP2P08253 660 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 FAM87AP0C7U9 286 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 TSPAN7P41732 249 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 DYNLT1P63172 113 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 CYP4F2P78329 520 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 ZBTB17Q13105 803 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 KIR2DS5Q14953 304 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.58□□□□□ -0.08
VPS28-215ENST00000531924 WDR74Q6RFH5 385 aaPredicted RBP14.58□□□□□ -0.08
VPS28-215ENST00000531924 TRIM48Q8IWZ4 208 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 RHOT2Q8IXI1 618 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 CACNA2D3Q8IZS8 1091 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 CNTD1Q8N815 330 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 EXD3Q8N9H8 876 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 NKD1Q969G9 470 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 TEFMQ96QE5 360 aaKnown RBP14.58□□□□□ -0.08
VPS28-215ENST00000531924 SRPK1Q96SB4 655 aaKnown RBP14.58□□□□□ -0.08
VPS28-215ENST00000531924 DNAJC7Q99615 494 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 ZSCAN5AQ9BUG6 496 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 BRD8Q9H0E9 1235 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 OR2AG1Q9H205 316 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 ARFGAP3Q9NP61 516 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 OCIAD1Q9NX40 245 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 SHOC2Q9UQ13 582 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 B3GALT1Q9Y5Z6 326 aa14.58□□□□□ -0.08
VPS28-215ENST00000531924 AHCTF1Q8WYP5 2266 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 NUAK1O60285 661 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 PIRTP0C851 137 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 F3P13726 295 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 UGT1A3P35503 534 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 EPHA4P54764 986 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 KCNC4Q03721 635 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 CDK18Q07002 472 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 TBR1Q16650 682 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 INSCQ1MX18 579 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 LINC00303Q3SY05 128 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 ANKS6Q68DC2 871 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 CRTC3Q6UUV7 619 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 BZW1Q7L1Q6 419 aaKnown RBP14.57□□□□□ -0.08
VPS28-215ENST00000531924 VSIG1Q86XK7 387 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 PLD5Q8N7P1 536 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 KIAA1143Q96AT1 154 aaPredicted RBP14.57□□□□□ -0.08
VPS28-215ENST00000531924 RNF25Q96BH1 459 aaPredicted RBP14.57□□□□□ -0.08
VPS28-215ENST00000531924 IMP4Q96G21 291 aaKnown RBP14.57□□□□□ -0.08
VPS28-215ENST00000531924 WDR24Q96S15 920 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 SLC25A51Q9H1U9 297 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 EPB41L1Q9H4G0 881 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 MAGEE1Q9HCI5 957 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 TRIM39Q9HCM9 518 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 KLC4Q9NSK0 619 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 DDX56Q9NY93 547 aaKnown RBP14.57□□□□□ -0.08
VPS28-215ENST00000531924 ATXN10Q9UBB4 475 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 CPNE7Q9UBL6 633 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 KLHL3Q9UH77 587 aa14.57□□□□□ -0.08
VPS28-215ENST00000531924 GPR89AB7ZAQ6 455 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 SPOPO43791 374 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 RAD1O60671 282 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 GPR89BP0CG08 455 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 ZNF8P17098 575 aaPredicted RBP14.56□□□□□ -0.08
VPS28-215ENST00000531924 SLC1A1P43005 524 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 ASTE1Q2TB18 679 aaPredicted RBP14.56□□□□□ -0.08
VPS28-215ENST00000531924 LRRC38Q5VT99 294 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 PDPK2PQ6A1A2 396 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 SLC9A4Q6AI14 798 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 CEACAM20Q6UY09 585 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 PLXDC1Q8IUK5 500 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 RHOT1Q8IXI2 618 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 TRAM1L1Q8N609 369 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 PMEPA1Q969W9 287 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 ZPBPQ9BS86 351 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 NHEJ1Q9H9Q4 299 aaPredicted RBP14.56□□□□□ -0.08
VPS28-215ENST00000531924 PRDM8Q9NQV8 689 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 SPTLC3Q9NUV7 552 aa14.56□□□□□ -0.08
VPS28-215ENST00000531924 PDP2Q9P2J9 529 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms