RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ERAP2Q6P179 960 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ZNF449Q6P9G9 518 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CRTC1Q6UUV9 634 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 USP45Q70EL2 814 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 KBTBD6Q86V97 674 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CCDC25Q86WR0 208 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 IGDCC3Q8IVU1 814 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ZBED8Q8IZ13 594 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CNPY4Q8N129 248 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MPP5Q8N3R9 675 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MREGQ8N565 214 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 PAF1Q8N7H5 531 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 LPCAT1Q8NF37 534 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MDGA1Q8NFP4 955 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 DTX3LQ8TDB6 740 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 STYXQ8WUJ0 223 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 STAMBPL1Q96FJ0 436 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 WDR89Q96FK6 387 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 SIPA1Q96FS4 1042 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MEGF10Q96KG7 1140 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 PKNOX2Q96KN3 472 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MRGPRX1Q96LB2 322 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 PWWP2AQ96N64 755 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 SSBP4Q9BWG4 385 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 FUT8Q9BYC5 575 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 FAM126AQ9BYI3 521 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 MKRN2Q9H000 416 aaKnown RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 CDH19Q9H159 772 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 LRRC4CQ9HCJ2 640 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 SAYSD1Q9NPB0 183 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ZDHHC4Q9NPG8 344 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CHRAC1Q9NRG0 131 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 RAD18Q9NS91 495 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 NLE1Q9NVX2 485 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 ZSCAN32Q9NX65 697 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MOCS1Q9NZB8 636 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ZC3H7BQ9UGR2 993 aaKnown RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 CYP8B1Q9UNU6 501 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 NCKAP1Q9Y2A7 1128 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 PCDHGA2Q9Y5H1 932 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 MAD1L1Q9Y6D9 718 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ZNF292O60281 2723 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CAPN8A6NHC0 703 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 H7C0S8 307 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 PSMD11O00231 422 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 AREL1O15033 823 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 MID1O15344 667 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 IGLV3-19P01714 112 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ACADMP11310 421 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ADRB3P13945 408 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 PGAM1P18669 254 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 PAMP19021 973 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 OXTRP30559 389 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 HOXA6P31267 233 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 PHBP35232 272 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 DRD3P35462 400 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 P2RY2P41231 377 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 CXCL12P48061 93 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 NEK3P51956 506 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 RPS26P62854 115 aaKnown RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 FAM193AP78312 1265 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 CREB5Q02930 508 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ACVR1Q04771 509 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ARHGEF7Q14155 803 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 GALNT3Q14435 633 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 SLC29A2Q14542 456 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 POU6F1Q14863 301 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 LRRC14Q15048 493 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ANKRD20A4Q4UJ75 823 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 HP1BP3Q5SSJ5 553 aaPredicted RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 TSTD2Q5T7W7 516 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 STEAP4Q687X5 459 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 CASC4Q6P4E1 433 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 DPPA4Q7L190 304 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ZSWIM9Q86XI8 627 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 LMNTD2Q8IXW0 634 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 NRSN1Q8IZ57 195 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 IQCKQ8N0W5 287 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 TTC30BQ8N4P2 665 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 HDDC3Q8N4P3 179 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 FBXO36Q8NEA4 188 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 PPHLN1Q8NEY8 458 aaKnown RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 GABPB2Q8TAK5 448 aaPredicted RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 BLOC1S5Q8TDH9 187 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 ARRDC3Q96B67 414 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 CDKN2AIPNLQ96HQ2 116 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 UBL7Q96S82 380 aaPredicted RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 OMDQ99983 421 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 CCDC77Q9BR77 488 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 RSRP1Q9BUV0 290 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 GPR63Q9BZJ6 419 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 PRMT8Q9NR22 394 aaPredicted RBP7.38□□□□□ -1.23
CD44-228ENST00000528455 TREX1Q9NSU2 369 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 SYBUQ9NX95 663 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 FBXL12Q9NXK8 326 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 IL17CQ9P0M4 197 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 EBF1Q9UH73 591 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 FZD4Q9ULV1 537 aa7.38□□□□□ -1.23
CD44-228ENST00000528455 TCAF1Q9Y4C2 921 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms