RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ADGRG1Q9Y653 693 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 FREM2Q5SZK8 3169 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 ASPMQ8IZT6 3477 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 DDX3YO15523 660 aaKnown RBP20.41■□□□□ 0.86
VPS28-206ENST00000526734 KCNN4O15554 427 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 GRID2O43424 1007 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 ECEL1O95672 775 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 FTCDO95954 541 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 EIF2S3P41091 472 aaKnown RBP20.41■□□□□ 0.86
VPS28-206ENST00000526734 CLCNKAP51800 687 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 INHBCP55103 352 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 MAZP56270 477 aaKnown RBP20.41■□□□□ 0.86
VPS28-206ENST00000526734 PCBP4P57723 403 aaKnown RBP20.41■□□□□ 0.86
VPS28-206ENST00000526734 C3orf38Q5JPI3 329 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 FAM182AQ5T1J6 154 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 GLT6D1Q7Z4J2 308 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 TTC30BQ8N4P2 665 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 DPYSL5Q9BPU6 564 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 STN1Q9H668 368 aaKnown RBP20.41■□□□□ 0.86
VPS28-206ENST00000526734 SATB2Q9UPW6 733 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 PKP3Q9Y446 797 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 ST14Q9Y5Y6 855 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 CAPN6Q9Y6Q1 641 aa20.41■□□□□ 0.86
VPS28-206ENST00000526734 TLX3O43711 291 aaPredicted RBP20.4■□□□□ 0.86
VPS28-206ENST00000526734 NRDCO43847 1150 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 SPAM1P38567 509 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 CHRNA4P43681 627 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 ABCG1P45844 678 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 FASLGP48023 281 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 RP1P56715 2156 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 B4GALNT1Q00973 533 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 CHST15Q7LFX5 561 aaPredicted RBP20.4■□□□□ 0.86
VPS28-206ENST00000526734 COL27A1Q8IZC6 1860 aaPredicted RBP20.4■□□□□ 0.86
VPS28-206ENST00000526734 SLC25A41Q8N5S1 370 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 Q8N9G6 341 aaPredicted RBP20.4■□□□□ 0.86
VPS28-206ENST00000526734 ZNF248Q8NDW4 579 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 C19orf43Q9BQ61 176 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 ZCCHC2Q9C0B9 1178 aaKnown RBP20.4■□□□□ 0.86
VPS28-206ENST00000526734 IL17CQ9P0M4 197 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 ATXN10Q9UBB4 475 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 FEZ2Q9UHY8 353 aaPredicted RBP20.4■□□□□ 0.86
VPS28-206ENST00000526734 LHX6Q9UPM6 363 aa20.4■□□□□ 0.86
VPS28-206ENST00000526734 C5orf60A6NFR6 353 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 OR5K4A6NMS3 321 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 AURKAO14965 403 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 CHUKO15111 745 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 CPNE6O95741 557 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 KLF1Q13351 362 aaPredicted RBP20.39■□□□□ 0.85
VPS28-206ENST00000526734 ITGA9Q13797 1035 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 MAP9Q49MG5 647 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 AADACL2Q6P093 401 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 SFTPA2Q8IWL1 248 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 SFRP1Q8N474 314 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 BRSK1Q8TDC3 778 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 BLOC1S5Q8TDH9 187 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 SH3KBP1Q96B97 665 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 DCBLD2Q96PD2 775 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 FICDQ9BVA6 458 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 FRMD8P1Q9BZ68 369 aaPredicted RBP20.39■□□□□ 0.85
VPS28-206ENST00000526734 OR2AG1Q9H205 316 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 EPB41L5Q9HCM4 733 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 ASCL3Q9NQ33 180 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 PACSIN2Q9UNF0 486 aaPredicted RBP20.39■□□□□ 0.85
VPS28-206ENST00000526734 PLEKHM1Q9Y4G2 1056 aa20.39■□□□□ 0.85
VPS28-206ENST00000526734 DMXL2Q8TDJ6 3036 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 KIR2DS5A0A0G2JLQ3 304 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 A0A0G2JNG1 304 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 C2orf81A6NN90 581 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 F5H423 210 aaPredicted RBP20.38■□□□□ 0.85
VPS28-206ENST00000526734 KIR2DS3K7RE56 304 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 PLD2O14939 933 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 KMOO15229 486 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ITGA2BP08514 1039 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ACP5P13686 325 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ZNF8P17098 575 aaPredicted RBP20.38■□□□□ 0.85
VPS28-206ENST00000526734 PSMB4P28070 264 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ADRA1AP35348 466 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 PDE1BQ01064 536 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ZFP36L1Q07352 338 aaKnown RBP20.38■□□□□ 0.85
VPS28-206ENST00000526734 SQSTM1Q13501 440 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 KIR2DS5Q14953 304 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 SEL1L2Q5TEA6 688 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 RANBP10Q6VN20 620 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ZNF662Q6ZS27 426 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 ADGRG6Q86SQ4 1221 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 PIM3Q86V86 326 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 LRRTM4Q86VH4 590 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 KLHDC8BQ8IXV7 354 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 CCDC97Q96F63 343 aaPredicted RBP20.38■□□□□ 0.85
VPS28-206ENST00000526734 SLC46A1Q96NT5 459 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 GORASP1Q9BQQ3 440 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 TIMM29Q9BSF4 260 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 C10orf88Q9H8K7 445 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 IL26Q9NPH9 171 aa20.38■□□□□ 0.85
VPS28-206ENST00000526734 URB1O60287 2271 aaKnown RBP20.37■□□□□ 0.85
VPS28-206ENST00000526734 GLYATL1P3A0A0U1RQE8 302 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 A0A0U1RQJ8 604 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 STX7O15400 261 aaKnown RBP20.37■□□□□ 0.85
VPS28-206ENST00000526734 GPLD1P80108 840 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 GTF2H3Q13889 308 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms