RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GATAD2AQ86YP4 633 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 CDK20Q8IZL9 346 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 NAT14Q8WUY8 206 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 NFKBIZQ9BYH8 718 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TMCO1Q9UM00 188 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ABCC6O95255 1503 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ROBO1Q9Y6N7 1651 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 IRAK2O43187 625 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 NBNO60934 754 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 PAX3P23760 479 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 KIR3DL1P43629 444 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 CAPZA2P47755 286 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 SLC18A2Q05940 514 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 PPP1R15BQ5SWA1 713 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 UBAP2Q5T6F2 1119 aaKnown RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 ZNF57Q68EA5 555 aaPredicted RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 WDR48Q8TAF3 677 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 SLC47A1Q96FL8 570 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 BTBD9Q96Q07 612 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 TNKS2Q9H2K2 1166 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 FAM124BQ9H5Z6 455 aaPredicted RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 OXSMQ9NWU1 459 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 SMPD3Q9NY59 655 aaPredicted RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 STMN3Q9NZ72 180 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 BTBD3Q9Y2F9 522 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 CCDC162PA2VCL2 907 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 TYROBPO43914 113 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 ACSL4O60488 711 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 DUSP11O75319 330 aaKnown RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 STBD1O95210 358 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 AHSGP02765 367 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 ADSLP30566 484 aaPredicted RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 RPS9P46781 194 aaKnown RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 CDC42P60953 191 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 NAA20P61599 178 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 RPS24P62847 133 aaKnown RBP12.6□□□□□ -0.39
USP53-209ENST00000514665 SERPINA13PQ6UXR4 307 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 SLC2A6Q9UGQ3 507 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 RAB26Q9ULW5 256 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 ASF1AQ9Y294 204 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 GLYATL1P3A0A0U1RQE8 302 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 SGTAO43765 313 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 DLX3O60479 287 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 DNAJA2O60884 412 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 HLA-DQB2P05538 268 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 TIMM50Q3ZCQ8 353 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 CDHR3Q6ZTQ4 885 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 FGD2Q7Z6J4 655 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 ZNF570Q96NI8 536 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 FCRL5Q96RD9 977 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 OSBPL6Q9BZF3 934 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 XYLT2Q9H1B5 865 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 ADAM7Q9H2U9 754 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 CFAP97Q9P2B7 532 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 ENTPD4Q9Y227 616 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 DGKBQ9Y6T7 804 aa12.6□□□□□ -0.39
USP53-209ENST00000514665 COL6A1P12109 1028 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 PRDX6P30041 224 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 SPIBQ01892 262 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 RPS27LQ71UM5 84 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 CHMP1BQ7LBR1 199 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 PROSER1Q86XN7 944 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 C2orf73Q8N5S3 287 aaPredicted RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 OR10A6Q8NH74 314 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 MYOCQ99972 504 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 AARSD1Q9BTE6 412 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 TOR4AQ9NXH8 423 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 HECAQ9UBI9 543 aaPredicted RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP53-209ENST00000514665 SH3GLB1Q9Y371 365 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ARL5AQ9Y689 179 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 STYXL1Q9Y6J8 313 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ZFP37Q9Y6Q3 630 aaPredicted RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 MYO18AQ92614 2054 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 CITO14578 2027 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 SUV39H1O43463 412 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 CES1P23141 567 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ADGRE1Q14246 886 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ANO7Q6IWH7 933 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 PAQR3Q6TCH7 311 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 CRTC3Q6UUV7 619 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 NAPRTQ6XQN6 538 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ENKURQ8TC29 256 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 NTAN1Q96AB6 310 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 RPL10LQ96L21 214 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 CXorf21Q9HAI6 301 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 RPS6KB2Q9UBS0 482 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 VPS51Q9UID3 782 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 CNOT6Q9ULM6 557 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 KPNA5O15131 536 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 OR10H3O60404 316 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 NPHS1O60500 1241 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 XYLBO75191 536 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 PRKCGP05129 697 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 NR2F1P10589 423 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ITGAXP20702 1163 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 RXRGP48443 463 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 RPIAP49247 311 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 PITX1P78337 314 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms