RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 GBA3Q9H227 469 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 EFCAB10A6NFE3 127 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 OR10H3O60404 316 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PRAMEF1O95521 474 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 IGFALSP35858 605 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 AP1S1P61966 158 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 BNC1Q01954 994 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 TNK2Q07912 1038 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CCNYL2Q5T2Q4 361 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 THOC7Q6I9Y2 204 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CERS6Q6ZMG9 384 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CNPPD1Q9BV87 410 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 ST6GALNAC4Q9H4F1 302 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 IGLV3-22A0A075B6J6 115 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 ARVCFO00192 962 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 C22orf31O95567 290 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PPIBP23284 216 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 DRG2P55039 364 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 SLC25A3Q00325 362 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 GBE1Q04446 702 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CPTPQ5TA50 214 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PYDC1Q8WXC3 89 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 BRINP2Q9C0B6 783 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CLN6Q9NWW5 311 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 RGSL1A5PLK6 1076 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 NUDT17P0C025 328 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 TPSB2P20231 275 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 SLC6A2P23975 617 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CMPK1P30085 196 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 SPIBQ01892 262 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 TPSAB1Q15661 275 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 SPANXN2Q5MJ10 180 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 CFAP206Q8IYR0 622 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PTCD2Q8WV60 388 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 INSIG1O15503 277 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 AOC2O75106 756 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 TFPIP10646 304 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 ALOX12P18054 663 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 EPHA3P29320 983 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 MAT2AP31153 395 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 HNRNPH3P31942 346 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 TRAF3Q13114 568 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 MON1BQ7L1V2 547 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PTCD3Q96EY7 689 aaKnown RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PTTG2Q9NZH5 202 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 ZNF490Q9ULM2 529 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-215ENST00000496447 PCDHGB3Q9Y5G1 929 aa13.08□□□□□ -0.32
PTPRF-215ENST00000496447 SLC31A1O15431 190 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 LRIG2O94898 1065 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 TRBC1P01850 177 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 L1CAMP32004 1257 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 CCR3P51677 355 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 AKAP14Q86UN6 197 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 CAMK1DQ8IU85 385 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 RAD51AP1Q96B01 352 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 Q96MT0 163 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 BCL2L14Q9BZR8 327 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 WDR12Q9GZL7 423 aaKnown RBP13.07□□□□□ -0.32
PTPRF-215ENST00000496447 GSTK1Q9Y2Q3 226 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 PCDHGC4Q9Y5F7 938 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 TOP3BO95985 862 aaKnown RBP13.07□□□□□ -0.32
PTPRF-215ENST00000496447 ALPPL2P10696 532 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 AKT2P31751 481 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 CCT3P49368 545 aaKnown RBP13.07□□□□□ -0.32
PTPRF-215ENST00000496447 RP9Q8TA86 221 aaKnown RBP13.07□□□□□ -0.32
PTPRF-215ENST00000496447 ADAMTS15Q8TE58 950 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 EQTNQ9NQ60 294 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 FFAR2O15552 330 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 SYN1P17600 705 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 NDST2P52849 883 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 SPESP1Q6UW49 350 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 CUZD1Q86UP6 607 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 PLD5Q8N7P1 536 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 TTC29Q8NA56 475 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-215ENST00000496447 ZNF354BQ96LW1 612 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 KLHL31Q9H511 634 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 CLDND1Q9NY35 253 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 SRRDQ9UH36 339 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 C3P01024 1663 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 ABHD14A-ACY1A0A1B0GW23 586 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 FPGTO14772 594 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 TAS2R41P59536 307 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 ECHDC2Q86YB7 292 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 SRFBP1Q8NEF9 429 aaKnown RBP13.07□□□□□ -0.32
PTPRF-215ENST00000496447 LCN9Q8WX39 176 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 ALG3Q92685 438 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 SLC25A51Q9H1U9 297 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 IKZF3Q9UKT9 509 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 EFR3BQ9Y2G0 817 aa13.07□□□□□ -0.32
PTPRF-215ENST00000496447 NFKBIEO00221 500 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 LRCH4O75427 683 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 SLC22A3O75751 556 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 ZNF132P52740 706 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 NAE1Q13564 534 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 TAB1Q15750 504 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 PDK4Q16654 411 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 NRF1Q16656 503 aa13.06□□□□□ -0.32
PTPRF-215ENST00000496447 RTL3Q8N8U3 475 aaKnown RBP13.06□□□□□ -0.32
PTPRF-215ENST00000496447 DRAXINQ8NBI3 349 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-215ENST00000496447 GPR21Q99679 349 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms