RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 KIAA0319Q5VV43 1072 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PM20D1Q6GTS8 502 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 RANBP10Q6VN20 620 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ARMCX2Q7L311 632 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 BEND5Q7L4P6 421 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ARMCX6Q7L4S7 300 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 AKAP14Q86UN6 197 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 IFNEQ86WN2 208 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 HID1Q8IV36 788 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SLC7A5P1Q8MH63 180 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 IPMKQ8NFU5 416 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SPATA22Q8NHS9 363 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 RHEBL1Q8TAI7 183 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 DYNC2LI1Q8TCX1 351 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ANKRD49Q8WVL7 239 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 NDRG1Q92597 394 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 TUBGCP3Q96CW5 907 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 YIPF6Q96EC8 236 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SPATA33Q96N06 139 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ZMAT2Q96NC0 199 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CCDC115Q96NT0 180 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 MBOAT4Q96T53 435 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SEPHS2Q99611 448 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 RBM4BQ9BQ04 359 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 RBM4Q9BWF3 364 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 NUSAP1Q9BXS6 441 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 DGCR6LQ9BY27 220 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 HOXD1Q9GZZ0 328 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 TUBB1Q9H4B7 451 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ALG9Q9H6U8 611 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 POPDC3Q9HBV1 291 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ARNT2Q9HBZ2 717 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 MID1IP1Q9NPA3 183 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PAK1IP1Q9NWT1 392 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 COMMD8Q9NX08 183 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ERAP1Q9NZ08 941 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ZIM2Q9NZV7 527 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 DNAJB9Q9UBS3 223 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 FZD1Q9UP38 647 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 TESMINQ9Y4I5 508 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 COL1A2P08123 1366 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CCDC154A6NI56 674 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 G3V2T6 193 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PIRO00625 290 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 AURKAO14965 403 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 LSM1O15116 133 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 HCRTO43612 131 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CD4P01730 458 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CYBBP04839 570 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ANXA6P08133 673 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 TCF3P15923 654 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 BDNFP23560 247 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 TPD52P55327 224 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF280AP59817 542 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ISL1P61371 349 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CHRNB3Q05901 458 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CD47Q08722 323 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 DNASE1L3Q13609 305 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CTU2Q2VPK5 515 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PGS1Q32NB8 556 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 RFX4Q33E94 735 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ZC3H12BQ5HYM0 836 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PAGE3Q5JUK9 113 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF691Q5VV52 312 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 GLYATQ6IB77 296 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 LAIR2Q6ISS4 152 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 LBX2Q6XYB7 198 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 STK32CQ86UX6 486 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SLC22A16Q86VW1 577 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 CILP2Q8IUL8 1156 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 B3GALNT2Q8NCR0 500 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 OR52E4Q8NGH9 312 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 RHOXF1Q8NHV9 184 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 FAR1Q8WVX9 515 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 POP5Q969H6 163 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 BTBD2Q9BX70 525 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 UGT2B28Q9BY64 529 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SPON1Q9HCB6 807 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 POLR3BQ9NW08 1133 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 C3orf18Q9UK00 162 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 POU2F3Q9UKI9 436 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 UBQLN1Q9UMX0 589 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 MYLKQ15746 1914 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 FAM92AA1XBS5 289 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 FAM234BA2RU67 622 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 TTC34A8MYJ7 566 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 TAF4O00268 1085 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SLC16A6O15403 523 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SLC7A4O43246 635 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 XYLBO75191 536 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SLC22A3O75751 556 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 LRIG2O94898 1065 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 INMTO95050 263 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 NADKO95544 446 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 MT-CYBP00156 380 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 C1RP00736 705 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 GSNP06396 782 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 CD1DP15813 335 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 GGT1P19440 569 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 WARSP23381 471 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms