RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 A0A0U1RQS6 177 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 CAPN5O15484 640 aaPredicted RBP12.33□□□□□ -0.44
COL6A1-205ENST00000492851 VEGFDO43915 354 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 ATP1A1P05023 1023 aaKnown RBP12.33□□□□□ -0.44
COL6A1-205ENST00000492851 FGF3P11487 239 aaPredicted RBP12.33□□□□□ -0.44
COL6A1-205ENST00000492851 CCL4P13236 92 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 PLA2G2AP14555 144 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 ETV5P41161 510 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 NOP2P46087 812 aaKnown RBP12.33□□□□□ -0.44
COL6A1-205ENST00000492851 LY6DQ14210 128 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 TEX44Q53QW1 395 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 ZNF569Q5MCW4 686 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 NKAIN2Q5VXU1 208 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 RFX6Q8HWS3 928 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 TRAM1L1Q8N609 369 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 RCBTB1Q8NDN9 531 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 AGAP3Q96P47 875 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 OLFM3Q96PB7 478 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 SMIM14Q96QK8 99 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 WDR24Q96S15 920 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 CHP1Q99653 195 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 SPATA16Q9BXB7 569 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 GPR63Q9BZJ6 419 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 TRABDQ9H4I3 376 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 UCK1Q9HA47 277 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 SLC39A1Q9NY26 324 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 FOXJ2Q9P0K8 574 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 TBC1D29Q9UFV1 150 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL6A1-205ENST00000492851 RP1P56715 2156 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 PTPRQQ9UMZ3 2332 aa12.33□□□□□ -0.44
COL6A1-205ENST00000492851 FASNP49327 2511 aaKnown RBP12.33□□□□□ -0.44
COL6A1-205ENST00000492851 KALRNO60229 2985 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 TRBV23OR9-2A0A075B6M9 112 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 A0A0A6YYK5 440 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 C3orf70A6NLC5 250 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 FADS2P1A8MWK0 482 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 AKR1B15C9JRZ8 316 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 J3QKU1 62 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 KMOO15229 486 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 SPOPO43791 374 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 KCNJ13O60928 360 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 MFAP3LO75121 409 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 NDST3O95803 873 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 EPOP01588 193 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 KRT1P04264 644 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 ACP5P13686 325 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 ZBTB17Q13105 803 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 GALNT3Q14435 633 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 CPNE8Q86YQ8 564 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 PLXDC1Q8IUK5 500 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 IL22RA1Q8N6P7 574 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 DTX3LQ8TDB6 740 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 BRSK1Q8TDC3 778 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 TFB1MQ8WVM0 346 aaKnown RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 RNF25Q96BH1 459 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 TADA1Q96BN2 335 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 CALR3Q96L12 384 aaKnown RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 TEKT5Q96M29 485 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 TRIB3Q96RU7 358 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 VAT1Q99536 393 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 EFHD1Q9BUP0 239 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 GLOD4Q9HC38 313 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 LUC7LQ9NQ29 371 aaKnown RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 FBXO8Q9NRD0 319 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 ATXN10Q9UBB4 475 aa12.32□□□□□ -0.44
COL6A1-205ENST00000492851 OAS3Q9Y6K5 1087 aaKnown RBP12.32□□□□□ -0.44
COL6A1-205ENST00000492851 GCN1Q92616 2671 aaKnown RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 AGRPO00253 132 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 PSTPIP1O43586 416 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 SNX2O60749 519 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 ZNF8P17098 575 aaPredicted RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 VCLP18206 1134 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 XRCC1P18887 633 aaPredicted RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 MAP4P27816 1152 aaKnown RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 HADHBP55084 474 aaKnown RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 CEACAM20Q6UY09 585 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 FAM129CQ86XR2 697 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 RBM12BQ8IXT5 1001 aaKnown RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 LRRN4Q8WUT4 740 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 NCSTNQ92542 709 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 P3H4Q92791 437 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 ART4Q93070 314 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 NKD1Q969G9 470 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 GLYATL1Q969I3 302 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 PLEKHG4BQ96PX9 1271 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 FERMT1Q9BQL6 677 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 OR2AG1Q9H205 316 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 TRIT1Q9H3H1 467 aaKnown RBP12.31□□□□□ -0.44
COL6A1-205ENST00000492851 TSPY26PQ9H489 355 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 SPTLC3Q9NUV7 552 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 HACD3Q9P035 362 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 CPNE7Q9UBL6 633 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 SHOC2Q9UQ13 582 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 KCNK6Q9Y257 313 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 ZNF711Q9Y462 761 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 PRKAB1Q9Y478 270 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 PCDHGA4Q9Y5G9 962 aa12.31□□□□□ -0.44
COL6A1-205ENST00000492851 A6NCN8 305 aa12.3□□□□□ -0.44
COL6A1-205ENST00000492851 EFCAB7A8K855 629 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms