RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TMEM121Q9BTD3 319 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 IL26Q9NPH9 171 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 VPS18Q9P253 973 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 LRIT1Q9P2V4 623 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 DKK4Q9UBT3 224 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ATXN7L1Q9ULK2 861 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ENTPD2Q9Y5L3 495 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ARL5AQ9Y689 179 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 NBEAQ8NFP9 2946 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 SCN8AQ9UQD0 1980 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 GOLGA6L9A6NEM1 432 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 TLX3O43711 291 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-214ENST00000490398 NUAK1O60285 661 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A9O60656 530 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 ANXA9O76027 345 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 MPOP05164 745 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 RPLP0P05388 317 aaKnown RBP17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A6P19224 532 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A1P22309 533 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A4P22310 534 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A3P35503 534 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A5P35504 534 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 CHRNA6Q15825 494 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 RBM44Q6ZP01 1051 aaKnown RBP17.94■□□□□ 0.46
COL9A3-214ENST00000490398 ZNF662Q6ZS27 426 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 GLT6D1Q7Z4J2 308 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 SLC13A5Q86YT5 568 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-214ENST00000490398 TTC13Q8NBP0 860 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 C1orf54Q8WWF1 131 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 NXPE2Q96DL1 559 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 ZSCAN5AQ9BUG6 496 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 FSD1LQ9BXM9 530 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 NRSN2Q9GZP1 204 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 CDH19Q9H159 772 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 TRABDQ9H4I3 376 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A7Q9HAW7 530 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A10Q9HAW8 530 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 UGT1A8Q9HAW9 530 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 SLC23A2Q9UGH3 650 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 APPL1Q9UKG1 709 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 KCNK6Q9Y257 313 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 AK5Q9Y6K8 562 aa17.94■□□□□ 0.46
COL9A3-214ENST00000490398 PPM1DO15297 605 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 B4GAT1O43505 415 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 BRINP1O60477 761 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 SLC25A14O95258 325 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-214ENST00000490398 ACP5P13686 325 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 GLB1P16278 677 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 B4GALNT1Q00973 533 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 RPS6KA1Q15418 735 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 SIX1Q15475 284 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-214ENST00000490398 OASLQ15646 514 aaKnown RBP17.93■□□□□ 0.46
COL9A3-214ENST00000490398 FAM151BQ6UXP7 276 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 SPRED1Q7Z699 444 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 PLEKHG4BQ96PX9 1271 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 TLR10Q9BXR5 811 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 FOXP3Q9BZS1 431 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 CARD9Q9H257 536 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 LRRN3Q9H3W5 708 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 TRIM39Q9HCM9 518 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 TBC1D29Q9UFV1 150 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 PPP2R2CQ9Y2T4 447 aa17.93■□□□□ 0.46
COL9A3-214ENST00000490398 CHD6Q8TD26 2715 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 GRID2O43424 1007 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 LIASO43766 372 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 STK10O94804 968 aaKnown RBP17.92■□□□□ 0.46
COL9A3-214ENST00000490398 OR1D5P58170 312 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 SPIDRQ14159 915 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 PLA2G4EQ3MJ16 856 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 SEL1L2Q5TEA6 688 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 KCTD11Q693B1 232 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 CRTC3Q6UUV7 619 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 CCNJLQ8IV13 435 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 ZNF547Q8IVP9 402 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 GLIS1Q8NBF1 620 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 NAT14Q8WUY8 206 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 PRR11Q96HE9 360 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-214ENST00000490398 SRPK1Q96SB4 655 aaKnown RBP17.92■□□□□ 0.46
COL9A3-214ENST00000490398 TBL1YQ9BQ87 522 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 RAD18Q9NS91 495 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 HACD3Q9P035 362 aa17.92■□□□□ 0.46
COL9A3-214ENST00000490398 RALYQ9UKM9 306 aaKnown RBP17.92■□□□□ 0.46
COL9A3-214ENST00000490398 AAR2Q9Y312 384 aaKnown RBP17.92■□□□□ 0.46
COL9A3-214ENST00000490398 ARHGEF17Q96PE2 2063 aaPredicted RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 A6NCN8 305 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 AGRPO00253 132 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 CCL22O00626 93 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 NUDT21O43809 227 aaKnown RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 TCEA3O75764 348 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 ETS1P14921 441 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 SPAM1P38567 509 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 TNNT3P45378 269 aaPredicted RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 SNX1Q13596 522 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 PRPSAP1Q14558 356 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 PARP6Q2NL67 630 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 PDPK2PQ6A1A2 396 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 ARHGEF18Q6ZSZ5 1173 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 ZNF761Q86XN6 746 aaPredicted RBP17.91■□□□□ 0.46
COL9A3-214ENST00000490398 PHYKPLQ8IUZ5 450 aa17.91■□□□□ 0.46
COL9A3-214ENST00000490398 OR4K2Q8NGD2 314 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms