RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 C2orf42Q9NWW7 574 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 GGA3Q9NZ52 723 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 MARCH4Q9P2E8 410 aaPredicted RBP2.85□□□□□ -1.95
CPSF3-205ENST00000489629 ACAD8Q9UKU7 415 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 SARDHQ9UL12 918 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 PRSS21Q9Y6M0 314 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 SMCHD1A6NHR9 2005 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 A0A087X002 238 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 FAM237AA0A1B0GTK4 181 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 A0A1W2PPI3 338 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 OR5K3A6NET4 321 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 SNAP23O00161 211 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 TSPAN4O14817 238 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 ANKRD28O15084 1053 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 TNFSF14O43557 240 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 CIDEAO60543 219 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 CRLF1O75462 422 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 IGLV1-44P01699 117 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 CSF2RAP15509 400 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF26P17031 533 aaPredicted RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 CNTFP26441 200 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 ABCD1P33897 745 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 KRT2P35908 639 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 DRG2P55039 364 aaKnown RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 COG7P83436 770 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 KIR2DS3Q14952 304 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 MYLK3Q32MK0 819 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 PAPD4Q6PIY7 484 aaKnown RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 PLXDC2Q6UX71 529 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 RBMS3Q6XE24 437 aaKnown RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 Q75L30 129 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 PIWIL4Q7Z3Z4 852 aaKnown RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 CCDC13Q8IYE1 715 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 WDR20Q8TBZ3 569 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 PSPC1Q8WXF1 523 aaKnown RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 TRIM63Q969Q1 353 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 KIF1BPQ96EK5 621 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 ABI3Q9P2A4 366 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 INTS6Q9UL03 887 aaKnown RBP2.84□□□□□ -1.95
CPSF3-205ENST00000489629 C2CD2Q9Y426 696 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 SMAD5-AS1Q9Y6J3 95 aa2.84□□□□□ -1.95
CPSF3-205ENST00000489629 TTC36A6NLP5 189 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 M0QZ24 198 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 HS3ST1O14792 307 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 WISP2O76076 250 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 PDE9AO76083 593 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 TSHBP01222 138 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 POLBP06746 335 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 UBA1P22314 1058 aaKnown RBP2.83□□□□□ -1.96
CPSF3-205ENST00000489629 KRTAP5-9P26371 169 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 HOXC13P31276 330 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 ELF1P32519 619 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 PIP4K2AP48426 406 aaPredicted RBP2.83□□□□□ -1.96
CPSF3-205ENST00000489629 NR2C2P49116 596 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 SPOCK1Q08629 439 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 TBX2Q13207 712 aaPredicted RBP2.83□□□□□ -1.96
CPSF3-205ENST00000489629 MAD2L1Q13257 205 aaPredicted RBP2.83□□□□□ -1.96
CPSF3-205ENST00000489629 TRPC3Q13507 836 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 OLIG2Q13516 323 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 TAF12Q16514 161 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 RAB6CQ53S08 254 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 CXorf66Q5JRM2 361 aaPredicted RBP2.83□□□□□ -1.96
CPSF3-205ENST00000489629 PHF21AQ96BD5 680 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 HVCN1Q96D96 273 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 ABHD8Q96I13 439 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 EGFL8Q99944 293 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 USP44Q9H0E7 712 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 RAB6CQ9H0N0 254 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 LRMDAQ9H2I8 198 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 KIF9Q9HAQ2 790 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 ADPRHL2Q9NX46 363 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 KLHL9Q9P2J3 617 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 HAO1Q9UJM8 370 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 RNF215Q9Y6U7 377 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 CAPN7Q9Y6W3 813 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 PRAG1Q86YV5 1406 aa2.83□□□□□ -1.96
CPSF3-205ENST00000489629 A0A0G2JNG1 304 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 IFRD1O00458 451 aaPredicted RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 PEX14O75381 377 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ZNF821O75541 412 aaPredicted RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 F9P00740 461 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ZNF182P17025 639 aaPredicted RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ARL1P40616 181 aaPredicted RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 IRX1P78414 480 aaPredicted RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ACVR2BQ13705 512 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 KIR2DS5Q14953 304 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 SLC1A5Q15758 541 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 SLC9C2Q5TAH2 1124 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ANKRD42Q8N9B4 389 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 OR14L1PQ8NHC6 308 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 HCAR2Q8TDS4 363 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 DNAAF4Q8WXU2 420 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 GTF3C6Q969F1 213 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 RNF125Q96EQ8 232 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 RRNAD1Q96FB5 475 aaKnown RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 NR1H4Q96RI1 486 aaPredicted RBP2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ATOH8Q96SQ7 321 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 PYGO2Q9BRQ0 406 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 ERVMER34-1Q9H9K5 563 aa2.82□□□□□ -1.96
CPSF3-205ENST00000489629 PPCSQ9HAB8 311 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms