RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 BEST3Q8N1M1 668 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 RDM1Q8NG50 284 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 GRAMD2BQ96HH9 432 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 SLC41A2Q96JW4 573 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 ELAC2Q9BQ52 826 aaKnown RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 EIF2AK1Q9BQI3 630 aaKnown RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 PIGQQ9BRB3 760 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 ZNF71Q9NQZ8 489 aaPredicted RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 FBXL2Q9UKC9 423 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 KLHL20Q9Y2M5 609 aa2.81□□□□□ -1.96
SMC4-220ENST00000488017 RRP7AQ9Y3A4 280 aaKnown RBP2.81□□□□□ -1.96
SMC4-220ENST00000488017 PCNX3Q9H6A9 2034 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 IGLV3-10A0A075B6K4 115 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 OR5K3A6NET4 321 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 SLC22A2O15244 555 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 TFP02787 698 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 CEBPBP17676 345 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 MCCP23508 829 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 SLC6A12P48065 614 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 TBX4P57082 545 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 MBTD1Q05BQ5 628 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 NAE1Q13564 534 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 BLMHQ13867 455 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 SYCP2LQ5T4T6 812 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 ZNF343Q6P1L6 599 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 NRROSQ86YC3 692 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 ZNF584Q8IVC4 421 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 USP38Q8NB14 1042 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 RBM15BQ8NDT2 890 aaKnown RBP2.8□□□□□ -1.96
SMC4-220ENST00000488017 HMGCLL1Q8TB92 370 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 DNAAF4Q8WXU2 420 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 PHF21AQ96BD5 680 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 CYYR1Q96J86 154 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 PSD2Q9BQI7 771 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 LRMDAQ9H2I8 198 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 TAOK3Q9H2K8 898 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 VEZTQ9HBM0 779 aa2.8□□□□□ -1.96
SMC4-220ENST00000488017 A0A0G2JNG1 304 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 C5orf60A6NFR6 353 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 MAGEB17A8MXT2 336 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 TAF4O00268 1085 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 BUD23O43709 281 aaKnown RBP2.79□□□□□ -1.96
SMC4-220ENST00000488017 TCEA3O75764 348 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 HMBSP08397 361 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 LIFP15018 202 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 CLDN20P56880 219 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 SORDQ00796 357 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 KIR2DS5Q14953 304 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 ZNF667Q5HYK9 610 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 DCST1Q5T197 706 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 ALS2CLQ60I27 953 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 C18orf63Q68DL7 685 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 PAQR6Q6TCH4 344 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 LONP2Q86WA8 852 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 OR2L2Q8NH16 312 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 EYA3Q99504 573 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 IFIH1Q9BYX4 1025 aaKnown RBP2.79□□□□□ -1.96
SMC4-220ENST00000488017 NOD2Q9HC29 1040 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 CLIP2Q9UDT6 1046 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 MAN1B1Q9UKM7 699 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 MOB4Q9Y3A3 225 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 MUC19Q7Z5P9 8384 aa2.79□□□□□ -1.96
SMC4-220ENST00000488017 FLT1P17948 1338 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 A0A087WW49 117 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 C1orf226A1L170 272 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 ANKRD66B4E2M5 251 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 IRF1P10914 325 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 WNT5AP41221 380 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 COG7P83436 770 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 RAPSNQ13702 412 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 KCNC3Q14003 757 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 PPP2R5BQ15173 497 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 GTDC1Q4AE62 458 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 ASPRV1Q53RT3 343 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 TXNDC8Q6A555 127 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 SIGIRRQ6IA17 410 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 JMJD6Q6NYC1 403 aaPredicted RBP2.78□□□□□ -1.96
SMC4-220ENST00000488017 PLXDC2Q6UX71 529 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 PQLC2Q6ZP29 291 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 TNIP2Q8NFZ5 429 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 NOC3LQ8WTT2 800 aaKnown RBP2.78□□□□□ -1.96
SMC4-220ENST00000488017 AFG1LQ8WV93 481 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 LTV1Q96GA3 475 aaPredicted RBP2.78□□□□□ -1.96
SMC4-220ENST00000488017 SYT15Q9BQS2 421 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 GPATCH1Q9BRR8 931 aaKnown RBP2.78□□□□□ -1.96
SMC4-220ENST00000488017 TKTL2Q9H0I9 626 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 SEBOXQ9HB31 216 aaPredicted RBP2.78□□□□□ -1.96
SMC4-220ENST00000488017 KIF17Q9P2E2 1029 aa2.78□□□□□ -1.96
SMC4-220ENST00000488017 GOLGA6L10A0A0M3HER8 536 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 VWA3AA6NCI4 1184 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 HS3ST1O14792 307 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 PLIN1O60240 522 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 IGKV3-15P01624 115 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 CNPP09543 421 aaKnown RBP2.77□□□□□ -1.97
SMC4-220ENST00000488017 SETSIPP0DME0 302 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 NR2F2P24468 414 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 PGFP49763 221 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 FOXD4Q12950 439 aaPredicted RBP2.77□□□□□ -1.97
SMC4-220ENST00000488017 RNPS1Q15287 305 aaKnown RBP2.77□□□□□ -1.97
SMC4-220ENST00000488017 ANKRD1Q15327 319 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms