RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TIAL1Q01085 375 aaKnown RBP eCLIP14.1□□□□□ -0.15
CUX1-209ENST00000487284 SF3A3Q12874 501 aaKnown RBP eCLIP14.1□□□□□ -0.15
CUX1-209ENST00000487284 FZD5Q13467 585 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 LRRC32Q14392 662 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 STARD3Q14849 445 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 BRAT1Q6PJG6 821 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 ZYG11AQ6WRX3 759 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 ZCCHC23Q6ZST2 131 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 MMAAQ8IVH4 418 aaKnown RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 CBARPQ8N350 705 aaPredicted RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 FSTL5Q8N475 847 aaPredicted RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 PIP4K2CQ8TBX8 421 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 C10orf82Q8WW14 230 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 LRIG1Q96JA1 1093 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 OSBPL1AQ9BXW6 950 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 TRIM55Q9BYV6 548 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 GPAMQ9HCL2 828 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 PPM1HQ9ULR3 514 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 UBA6A0AVT1 1052 aaPredicted RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 FAM170BA6NMN3 283 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 DNAJC6O75061 913 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 H2AFYO75367 372 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 CLDN7O95471 211 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 LTA4HP09960 611 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 MYL2P10916 166 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 RALBP11234 206 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 CD9P21926 228 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 COPAP53621 1224 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 PTPN5P54829 565 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 ADARP55265 1226 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 POLR2LP62875 67 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 FAM83EQ2M2I3 478 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 ZRANB3Q5FWF4 1079 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TECRLQ5HYJ1 363 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 CRTC1Q6UUV9 634 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TSPAN33Q86UF1 283 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TMIEQ8NEW7 156 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 PPP1R14CQ8TAE6 165 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 HEXDCQ8WVB3 486 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 SCYL1Q96KG9 808 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 MRPL46Q9H2W6 279 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 CD248Q9HCU0 757 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 NPHS2Q9NP85 383 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 THAP1Q9NVV9 213 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 OXSMQ9NWU1 459 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 XPR1Q9UBH6 696 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 APPL1Q9UKG1 709 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 MMP17Q9ULZ9 603 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 SLC30A1Q9Y6M5 507 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 USH1CQ9Y6N9 552 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TRBV5-4A0A0C4DH59 114 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 CCT8L1PA6NM43 557 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 SRP72O76094 671 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 CCDC166P0CW27 439 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 BPIP17213 487 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 GLRBP48167 497 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 PSMD8P48556 350 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 PRKAA2P54646 552 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 SATB1Q01826 763 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 OVGP1Q12889 678 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 GAS6Q14393 721 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 CSHL1Q14406 222 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 HSF5Q4G112 596 aaPredicted RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 ZNF805Q5CZA5 627 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 LRRC73Q5JTD7 316 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 EOGTQ5NDL2 527 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 AGAP9Q5VTM2 703 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TMEM207Q6UWW9 146 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TMEM92Q6UXU6 159 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 CERS6Q6ZMG9 384 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 PARS2Q7L3T8 475 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 DSG4Q86SJ6 1040 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 PIM3Q86V86 326 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 SYNPOQ8N3V7 929 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 SREK1Q8WXA9 508 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 CCT6BQ92526 530 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.09□□□□□ -0.15
CUX1-209ENST00000487284 ARRDC3Q96B67 414 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 RMDN2Q96LZ7 410 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 BIRC8Q96P09 236 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 UHRF1Q96T88 793 aaPredicted RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 NELL2Q99435 816 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 MRPL57Q9BQC6 102 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 C20orf27Q9GZN8 174 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 MKRN2Q9H000 416 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 RSPH9Q9H1X1 276 aaPredicted RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 FAM96AQ9H5X1 160 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 IL26Q9NPH9 171 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 CPSF2Q9P2I0 782 aaKnown RBP14.09□□□□□ -0.15
CUX1-209ENST00000487284 MED16Q9Y2X0 877 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 COMMD10Q9Y6G5 202 aa14.09□□□□□ -0.15
CUX1-209ENST00000487284 C16orf96A6NNT2 1141 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 C1QTNF3-AMACRE9PGA6 284 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 STK25O00506 426 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 TRIM13O60858 407 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 KIAA0754O94854 1291 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 PRAMEF1O95521 474 aa14.08□□□□□ -0.16
CUX1-209ENST00000487284 PKMP14618 531 aaKnown RBP14.08□□□□□ -0.16
CUX1-209ENST00000487284 ZNF37AP17032 561 aaPredicted RBP14.08□□□□□ -0.16
CUX1-209ENST00000487284 LHCGRP22888 699 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms