RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 CDH22Q9UJ99 828 aa20.21■□□□□ 0.83
HPS3-206ENST00000486530 SLC25A13Q9UJS0 675 aa20.21■□□□□ 0.83
HPS3-206ENST00000486530 APPL1Q9UKG1 709 aa20.21■□□□□ 0.83
HPS3-206ENST00000486530 NPEPPSL1A6NEC2 478 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 BTN3A1O00481 513 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 MOSPD3O75425 235 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 ECI2O75521 394 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 RFPL2O75678 378 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 SIX3O95343 332 aaPredicted RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 TSPAN12O95859 305 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 HOXA9P31269 272 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 GKP32189 559 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 HNF1BP35680 557 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 CDKN3Q16667 212 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 FUT11Q495W5 492 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 C9orf50Q5SZB4 431 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 FAM109BQ6ICB4 259 aaPredicted RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 PGM2L1Q6PCE3 622 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 FAM151BQ6UXP7 276 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.2■□□□□ 0.82
HPS3-206ENST00000486530 CLYBLQ8N0X4 340 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 LEMD2Q8NC56 503 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 GIMAP7Q8NHV1 300 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 FUBP1Q96AE4 644 aaKnown RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 LINGO1Q96FE5 620 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 RPL10LQ96L21 214 aaKnown RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 IKZF3Q9UKT9 509 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 STX16-NPEPL1H3BU86 382 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 CDC7O00311 574 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 STX16O14662 325 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 RHOP08100 348 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 FGF4P08620 206 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 ZNF7P17097 686 aaPredicted RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 ITGALP20701 1170 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 RPS3P23396 243 aaKnown RBP eCLIP20.2■□□□□ 0.82
HPS3-206ENST00000486530 CTSOP43234 321 aaPredicted RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 STK19P49842 368 aaPredicted RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 TBL3Q12788 808 aaKnown RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 CCDC6Q16204 474 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 TXNDC11Q6PKC3 985 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 C16orf89Q6UX73 402 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 SNX20Q7Z614 316 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 MARK4Q96L34 752 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 LYSMD1Q96S90 227 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 CEP44Q9C0F1 390 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 TDP1Q9NUW8 608 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 STX18Q9P2W9 335 aaKnown RBP20.2■□□□□ 0.82
HPS3-206ENST00000486530 NOTCH4Q99466 2003 aa20.2■□□□□ 0.82
HPS3-206ENST00000486530 GAPDHSO14556 408 aaPredicted RBP20.19■□□□□ 0.82
HPS3-206ENST00000486530 GPR39O43194 453 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 KLK8O60259 260 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 CLASP2O75122 1294 aaKnown RBP20.19■□□□□ 0.82
HPS3-206ENST00000486530 CDK14O94921 469 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 TSPAN8P19075 237 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 NUDT2P50583 147 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 CLCN7P51798 805 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 CDH13P55290 713 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 SH3BP2P78314 561 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 SQLEQ14534 574 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 LYPLAL1Q5VWZ2 237 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 CLEC6AQ6EIG7 209 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 TMEM25Q86YD3 366 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 KYQ8NBH2 561 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 RIN3Q8TB24 985 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 CLPBQ9H078 707 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 NDE1Q9NXR1 346 aa20.19■□□□□ 0.82
HPS3-206ENST00000486530 NEDD8-MDP1E9PL57 170 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 UBDO15205 165 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 CLDN7O95471 211 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 RPS17P08708 135 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 EEF1DP29692 281 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 PTDSS1P48651 473 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 LCP2Q13094 533 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 NFATC2Q13469 925 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 MYLK3Q32MK0 819 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 ANKS6Q68DC2 871 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 SERPINA9Q86WD7 417 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 CPNE9Q8IYJ1 553 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 RBFAQ8N0V3 343 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 CBARPQ8N350 705 aaPredicted RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 PCDH20Q8N6Y1 951 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 KCNV2Q8TDN2 545 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 EEF1AKMT1Q8WVE0 214 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 C19orf60Q96EN9 201 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 TACO1Q9BSH4 297 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 C1QTNF3Q9BXJ4 246 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 ASB8Q9H765 288 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 MID1IP1Q9NPA3 183 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 HECAQ9UBI9 543 aaPredicted RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 GNPTGQ9UJJ9 305 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 PRPF19Q9UMS4 504 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 DHRS7Q9Y394 339 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 TRBV5-4A0A0C4DH59 114 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 AIM2O14862 343 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 XYLBO75191 536 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 HNRNPA1P09651 372 aaKnown RBP eCLIP20.18■□□□□ 0.82
HPS3-206ENST00000486530 PABPC1P11940 636 aaKnown RBP20.18■□□□□ 0.82
HPS3-206ENST00000486530 EPCAMP16422 314 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 GCKP35557 465 aa20.18■□□□□ 0.82
HPS3-206ENST00000486530 SPAM1P38567 509 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms