RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 KCNG4Q8TDN1 519 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 INTS12Q96CB8 462 aaKnown RBP3.71□□□□□ -1.82
VPS41-213ENST00000485955 PERPQ96FX8 193 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 ST6GAL2Q96JF0 529 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 NEURL2Q9BR09 285 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 STRA6Q9BX79 667 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 PREBQ9HCU5 417 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 UBN1Q9NPG3 1134 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 TAS2R10Q9NYW0 307 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 OR14J1Q9UGF5 321 aa3.71□□□□□ -1.82
VPS41-213ENST00000485955 IGLV5-45A0A087WSX0 123 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 A0A1W2PP11 408 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 PMS2P5A8MQ11 134 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 EIF3DO15371 548 aaKnown RBP eCLIP3.7□□□□□ -1.82
VPS41-213ENST00000485955 SYNGR3O43761 229 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 WISP2O76076 250 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 IGHV4-39P01824 125 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 HOXC9P31274 260 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 PBX3P40426 434 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 NR0B1P51843 470 aaKnown RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 RARSP54136 660 aaKnown RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 TERF1P54274 439 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 CASP6P55212 293 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 DCTN2Q13561 401 aaKnown RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 C14orf177Q52M58 125 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 GSTA5Q7RTV2 222 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 DGLUCYQ7Z3D6 616 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 ADSSL1Q8N142 457 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 RBM15BQ8NDT2 890 aaKnown RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 GRAPLQ8TC17 118 aaPredicted RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 MORC4Q8TE76 937 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 HARBI1Q96MB7 349 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 WDFY2Q96P53 400 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 RANBP17Q9H2T7 1088 aaKnown RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 TCP11L1Q9NUJ3 509 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 FAM118AQ9NWS6 357 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 C9orf78Q9NZ63 289 aaPredicted RBP3.7□□□□□ -1.82
VPS41-213ENST00000485955 KLHL9Q9P2J3 617 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 COPG2Q9UBF2 871 aa3.7□□□□□ -1.82
VPS41-213ENST00000485955 NACADO15069 1562 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 BAZ1AQ9NRL2 1556 aaPredicted RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 A0A1B0GVC2 190 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 A0A1W2PRG0 241 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 HS3ST1O14792 307 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 EDIL3O43854 480 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 CTSVO60911 334 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 JRKO75564 520 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 EIF3JO75822 258 aaKnown RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 SEC14L2O76054 403 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 GM2AP17900 193 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 UBA1P22314 1058 aaKnown RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 RPL7AP62424 266 aaKnown RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 OLR1P78380 273 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 PLIN5Q00G26 463 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 GAGE5Q13069 117 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 GAGE6Q13070 117 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 MAD2L1Q13257 205 aaPredicted RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 CCNG2Q16589 344 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 MYLK3Q32MK0 819 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 CCNYL2Q5T2Q4 361 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 NSUN5P2Q63ZY6 315 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 ARHGAP17Q68EM7 881 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 PAPD4Q6PIY7 484 aaKnown RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 ATF7IPQ6VMQ6 1270 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 ZNF704Q6ZNC4 412 aaPredicted RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 SMC5Q8IY18 1101 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 TMEM116Q8NCL8 245 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 OR10V1Q8NGI7 309 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 FAM76AQ8TAV0 307 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 WBP2Q969T9 261 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 F2RL3Q96RI0 385 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 SMC6Q96SB8 1091 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 MAP7D2Q96T17 732 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 LITAFQ99732 161 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 LRMDAQ9H2I8 198 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 POLR1BQ9H9Y6 1135 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 RANGRFQ9HD47 186 aaPredicted RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 DLGAP2Q9P1A6 1054 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 MARCH4Q9P2E8 410 aaPredicted RBP3.69□□□□□ -1.82
VPS41-213ENST00000485955 POLG2Q9UHN1 485 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 CLIC4Q9Y696 253 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 ARHGEF40Q8TER5 1519 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 SNED1Q8TER0 1413 aa3.69□□□□□ -1.82
VPS41-213ENST00000485955 A0A1W2PPH5 198 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 OR5K3A6NET4 321 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 ATP2A1O14983 1001 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 PRKNO60260 465 aaPredicted RBP3.68□□□□□ -1.82
VPS41-213ENST00000485955 LDLRP01130 860 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 TUBBP07437 444 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 PATE4P0C8F1 98 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 KRTAP10-5P60370 271 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 TUBB4BP68371 445 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 TMEM30BQ3MIR4 351 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 WDR38Q5JTN6 314 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 LRIF1Q5T3J3 769 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 SLC35E4Q6ICL7 350 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 SLC27A1Q6PCB7 646 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 CEACAM20Q6UY09 585 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 Q75L30 129 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 PIWIL4Q7Z3Z4 852 aaKnown RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms