RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 HERPUD2Q9BSE4 406 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ASPSCR1Q9BZE9 553 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 XPO4Q9C0E2 1151 aaKnown RBP12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 UCK1Q9HA47 277 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 FBXO8Q9NRD0 319 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PKD2L2Q9NZM6 624 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ATXN10Q9UBB4 475 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.12□□□□□ -0.473e-8■■□□□ 12.2
MSH5-SAPCD1-205ENST00000476085 COL12A1Q99715 3063 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 FLNCQ14315 2725 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NBASA2RRP1 2371 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KIR2DS5A0A0G2JLQ3 304 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 A0A0G2JNG1 304 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GPR89AB7ZAQ6 455 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KIR2DS3K7RE56 304 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TERTO14746 1132 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GRID2O43424 1007 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ASMTLO95671 621 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GPR89BP0CG08 455 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNF8P17098 575 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 XRCC1P18887 633 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GJC1P36383 396 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ARHGAP25P42331 645 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 RAB15P59190 212 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 UBE2IP63279 158 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KIR2DS5Q14953 304 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CLCA4Q14CN2 919 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TAZQ16635 292 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LRRC38Q5VT99 294 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CHST15Q7LFX5 561 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZSCAN1Q8NBB4 408 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OR10G6Q8NH81 332 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CCHCR1Q8TD31 782 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC38A3Q99624 504 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CHP1Q99653 195 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ADGRE3Q9BY15 652 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC25A51Q9H1U9 297 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZFYVE1Q9HBF4 777 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TRIM39Q9HCM9 518 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GEMIN8Q9NWZ8 242 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC39A1Q9NY26 324 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC23A2Q9UGH3 650 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TMPRSS11EQ9UL52 423 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TTLL3Q9Y4R7 772 aa12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TMEM184BQ9Y519 407 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNF106Q9H2Y7 1883 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PTPN13Q12923 2485 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 RELNP78509 3460 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LILRA5A6NI73 299 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OR5K4A6NMS3 321 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 EFCAB7A8K855 629 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GOLGA6L19H0YKK7 550 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SUV39H1O43463 412 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 DUX1O43812 170 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 WISP1O95388 367 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 C9P02748 559 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 FAM87AP0C7U9 286 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SFTPCP11686 197 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LIFP15018 202 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ATP1A2P50993 1020 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NFATC3Q12968 1075 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 BIRC2Q13490 618 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MESDQ14696 234 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 DCAF12Q5T6F0 453 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ANKS6Q68DC2 871 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PDPK2PQ6A1A2 396 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TIPARPQ7Z3E1 657 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ADGRG6Q86SQ4 1221 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC9B2Q86UD5 537 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NT5DC3Q86UY8 548 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNF547Q8IVP9 402 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TRAM1L1Q8N609 369 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CCDC112Q8NEF3 446 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 JPH3Q8WXH2 748 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SH3KBP1Q96B97 665 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PLEKHG4BQ96PX9 1271 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TEFMQ96QE5 360 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZSCAN5AQ9BUG6 496 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 BRD8Q9H0E9 1235 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 EPB41L1Q9H4G0 881 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PRDM8Q9NQV8 689 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OGFRQ9NZT2 677 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SCHIP1Q9P0W5 487 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CPNE7Q9UBL6 633 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KCNK6Q9Y257 313 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 HECTD1Q9ULT8 2610 aa12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MN1Q10571 1320 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LRRD1A4D1F6 860 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC28A2O43868 658 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC25A14O95258 325 aaPredicted RBP12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ANKRD34CP0C6C1 535 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ACP5P13686 325 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC2A4P14672 509 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 BPIP17213 487 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC19A1P41440 591 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CDK18Q07002 472 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NFATC2Q13469 925 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GALNT3Q14435 633 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PDK1Q15118 436 aa12.09□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KHDC1Q4VXA5 237 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms