RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SETX	Q7Z333	2677 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	C2orf81	A6NN90	581 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	TMX2-CTNND1	H3BSU7	103 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	STX7	O15400	261 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	GRID2	O43424	1007 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	NUDT21	O43809	227 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	NOBOX	O60393	691 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	SOD1	P00441	154 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	PRB1	P04280	392 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCDC175	P0C221	793 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	JMJD7	P0C870	316 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	PSMB4	P28070	264 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	PTPN7	P35236	360 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	SPAM1	P38567	509 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CHRNA4	P43681	627 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ABCG1	P45844	678 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	MAPK9	P45984	424 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	LMAN1	P49257	510 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	INHBC	P55103	352 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	DCDC1	P59894	354 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCDC173	Q0VFZ6	552 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	LRP8	Q14114	963 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	RTP5	Q14D33	572 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	SLC1A5	Q15758	541 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	PYCR3	Q53H96	274 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ANKRD20A2	Q5SQ80	823 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CERCAM	Q5T4B2	595 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ANKRD20A1	Q5TYW2	823 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ANKRD20A3	Q5VUR7	823 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CDCP2	Q5VXM1	449 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZDHHC20	Q5W0Z9	365 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	FAM151B	Q6UXP7	276 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	TMC3	Q7Z5M5	1100 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRAPPC5	Q8IUR0	188 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRIM48	Q8IWZ4	208 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ARL14	Q8N4G2	192 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRAM1L1	Q8N609	369 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	LRRC57	Q8N9N7	239 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	GPR26	Q8NDV2	337 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	WDR36	Q8NI36	951 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCDC110	Q8TBZ0	833 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ALG3	Q92685	438 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	GLYATL1	Q969I3	302 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	GRAMD1A	Q96CP6	724 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	SLC38A3	Q99624	504 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	APOL2	Q9BQE5	337 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	FOXP3	Q9BZS1	431 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	RMI1	Q9H9A7	625 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	POLR1B	Q9H9Y6	1135 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	LZTFL1	Q9NQ48	299 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	THSD1	Q9NS62	852 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	DKK4	Q9UBT3	224 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	KCNK6	Q9Y257	313 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	PLEKHM1	Q9Y4G2	1056 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	ENTPD2	Q9Y5L3	495 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	OAS3	Q9Y6K5	1087 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	CAPN6	Q9Y6Q1	641 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	PIKFYVE	Q9Y2I7	2098 aa		11.42	□□□□□ -0.58
CPNE1-222	ENST00000473373	LOC400499	M0QZD8	3231 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCDC187	A0A096LP49	1063 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373		A0A0U1RQJ8	604 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	PDZK1P1	A8MUH7	402 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373		D6RAR5	112 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	BUD23	O43709	281 aa	Known RBP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	AGT	P01019	485 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	BPI	P17213	487 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	VCL	P18206	1134 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	AKT1	P31749	480 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	PCBP4	P57723	403 aa	Known RBP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	HLTF	Q14527	1009 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	TBC1D25	Q3MII6	688 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF648	Q5T619	568 aa	Predicted RBP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	BROX	Q5VW32	411 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	PDPK2P	Q6A1A2	396 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	KDELC1	Q6UW63	502 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	SPRED1	Q7Z699	444 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	PIM3	Q86V86	326 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	LRRTM4	Q86VH4	590 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	SFTPA2	Q8IWL1	248 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	FBXO39	Q8N4B4	442 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	RNF10	Q8N5U6	811 aa	Known RBP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	PTCD2	Q8WV60	388 aa	Known RBP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	PATE1	Q8WXA2	126 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	FGF11	Q92914	225 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	COL26A1	Q96A83	441 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	OXNAD1	Q96HP4	312 aa	Predicted RBP	11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	COX14	Q96I36	57 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	MRGPRX2	Q96LB1	330 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	SPATA13	Q96N96	652 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	CARD9	Q9H257	536 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRIM39	Q9HCM9	518 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	KCNK4	Q9NYG8	393 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.41	□□□□□ -0.58	2e-16	■■■□□ 16.4
CPNE1-222	ENST00000473373	ATXN10	Q9UBB4	475 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	RABGEF1	Q9UJ41	708 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	DNAJC16	Q9Y2G8	782 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms