RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ERP44Q9BS26 406 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 RTKNQ9BST9 563 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 LRRC61Q9BV99 259 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 TRIM31Q9BZY9 425 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 CARS2Q9HA77 564 aaKnown RBP11.84□□□□□ -0.51
VPS13D-204ENST00000469054 MRM3Q9HC36 420 aaKnown RBP11.84□□□□□ -0.51
VPS13D-204ENST00000469054 ARFGAP3Q9NP61 516 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 CHRAC1Q9NRG0 131 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 SMOXQ9NWM0 555 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 UCKL1Q9NWZ5 548 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 SYBUQ9NX95 663 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 DLL3Q9NYJ7 618 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 VPS18Q9P253 973 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 ATXN10Q9UBB4 475 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 SLC2A6Q9UGQ3 507 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 SUFUQ9UMX1 484 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 CSNK1G3Q9Y6M4 447 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 SLC30A1Q9Y6M5 507 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 RALGAPA1Q6GYQ0 2036 aa11.84□□□□□ -0.51
VPS13D-204ENST00000469054 SDR42E2A6NKP2 422 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 AGAP14A8MT82 685 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GPR89AB7ZAQ6 455 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 NDC80O14777 642 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SCAMP1O15126 338 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GPR39O43194 453 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 AQP9O43315 295 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 DNAJC6O75061 913 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 MTX2O75431 263 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SEC31AO94979 1220 aaKnown RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GPR89BP0CG08 455 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ITGALP20701 1170 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 CA5AP35218 305 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GRK6P43250 576 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 MAGEA3P43357 314 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 RPL21P46778 160 aaKnown RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GNPDA1P46926 289 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ITGA8P53708 1063 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ACVR1Q04771 509 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 TMEM115Q12893 351 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 C1orf61Q13536 156 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ELOCQ15369 112 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 INAVAQ3KP66 663 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GPR33Q49SQ1 333 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 LDLRAP1Q5SW96 308 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF648Q5T619 568 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 HIBCHQ6NVY1 386 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 MARK2Q7KZI7 788 aaKnown RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SNX20Q7Z614 316 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ADGRG6Q86SQ4 1221 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 PIP4P1Q86T03 277 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 NAXDQ8IW45 347 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 FSTL5Q8N475 847 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 BBOF1Q8ND07 529 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 DDHD1Q8NEL9 900 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 GDAP1Q8TB36 358 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 RHBDD1Q8TEB9 315 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SETD7Q8WTS6 366 aaKnown RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 HDAC10Q969S8 669 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 ULK4Q96C45 1275 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SNF8Q96H20 258 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 KIFC1Q9BW19 673 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 CLPBQ9H078 707 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 TMEM168Q9H0V1 697 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 OR2AG1Q9H205 316 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SUDS3Q9H7L9 328 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 RMI1Q9H9A7 625 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 TRNAU1APQ9NX07 287 aaKnown RBP11.83□□□□□ -0.52
VPS13D-204ENST00000469054 CRLS1Q9UJA2 301 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SOX13Q9UN79 622 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 BTBD3Q9Y2F9 522 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 SNX24Q9Y343 169 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 DNAH14Q0VDD8 3507 aa11.83□□□□□ -0.52
VPS13D-204ENST00000469054 LRRK1Q38SD2 2015 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 MAGEB16A2A368 324 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CCDC162PA2VCL2 907 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CTAGE15A4D2H0 777 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 LMO7DNF2Z398 122 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 TPP1O14773 563 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GRID2O43424 1007 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 VEGFDO43915 354 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 NUAK1O60285 661 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CBFA2T3O75081 653 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CDK14O94921 469 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GOT2P00505 430 aaKnown RBP11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CELA2BP08218 269 aaPredicted RBP11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CTAGE8P0CG41 777 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GIMD1P0DJR0 217 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF8P17098 575 aaPredicted RBP11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CSRP1P21291 193 aaKnown RBP11.82□□□□□ -0.52
VPS13D-204ENST00000469054 NMBRP28336 390 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CACNG1Q06432 222 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 KHDC1Q4VXA5 237 aaKnown RBP11.82□□□□□ -0.52
VPS13D-204ENST00000469054 PYCR3Q53H96 274 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 ZRANB3Q5FWF4 1079 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GPRC6AQ5T6X5 926 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 DUPD1Q68J44 220 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CASC4Q6P4E1 433 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CTAGE6Q86UF2 777 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GKN2Q86XP6 184 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GALNT13Q8IUC8 556 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms