RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TPD52L1Q16890 204 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 C2orf76Q3KRA6 126 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TOR1AIP1Q5JTV8 583 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PXDC1Q5TGL8 231 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PRAMEF9Q5VWM5 478 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ARMC6Q6NXE6 501 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PRMT9Q6P2P2 845 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TPGS1Q6ZTW0 290 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PEX26Q7Z412 305 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 NEK8Q86SG6 692 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 THNSL1Q8IYQ7 743 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ADGRG5Q8IZF4 528 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 CACNA2D3Q8IZS8 1091 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ATP6V0D2Q8N8Y2 350 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 OR7D4Q8NG98 312 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 OR8J2Q8NGG1 315 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 IL31RAQ8NI17 732 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 DEPDC1BQ8WUY9 529 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 AKAP1Q92667 903 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 MARC2Q969Z3 335 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 RGMAQ96B86 450 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PHF21AQ96BD5 680 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC35A4Q96G79 324 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 KAZALD1Q96I82 304 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ZFYVE19Q96K21 471 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF558Q96NG5 402 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 QRFPRQ96P65 431 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM120AQ9BXJ8 343 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TRIM54Q9BYV2 358 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ANKRD2Q9GZV1 360 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 USP44Q9H0E7 712 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 HSD3B7Q9H2F3 369 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 AGO3Q9H9G7 860 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PNPLA8Q9NP80 782 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 DIABLOQ9NR28 239 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ZSCAN32Q9NX65 697 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 ERVK13-1Q9NX77 482 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SYBUQ9NX95 663 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 STMN3Q9NZ72 180 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 PTTG2Q9NZH5 202 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 VPS4AQ9UN37 437 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SNX7Q9UNH6 387 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 TDRKHQ9Y2W6 561 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 KLF2Q9Y5W3 355 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 A4D1N5 150 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 MFSD2BA6NFX1 497 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM47DPA6NHR8 397 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TO15178 435 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 NPHS1O60500 1241 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 NOS1APO75052 506 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 ATG13O75143 517 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CNOT3O75175 753 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PTP4A3O75365 173 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CRCPO75575 148 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PDE8BO95263 885 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 BAG3O95817 575 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 IL1AP01583 271 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 AFPP02771 609 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 C4BPAP04003 597 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 BRAFP15056 766 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GSPT1P15170 499 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 HOXB4P17483 251 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 HK1P19367 917 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CMA1P23946 247 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 KIR3DL1P43629 444 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC11A1P49279 550 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 IRAK1P51617 712 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CCR9P51686 369 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 HK2P52789 917 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 ATXN3P54252 364 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CDH6P55285 790 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GNG2P59768 71 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RNASE9P60153 205 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 FMO1Q01740 532 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CYP24A1Q07973 514 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CHAF1BQ13112 559 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 FADDQ13158 208 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GRAPQ13588 217 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RPS6KA2Q15349 733 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC35G1Q2M3R5 365 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 HFEQ30201 348 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CNPY1Q3B7I2 92 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PRR16Q569H4 304 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 ATAD3BQ5T9A4 648 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RRAGBQ5VZM2 374 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RGMBQ6NW40 437 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 KLHDC10Q6PID8 442 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PAOXQ6QHF9 649 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CAMKMTQ7Z624 323 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PHYKPLQ8IUZ5 450 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CPOQ8IVL8 374 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GPR65Q8IYL9 337 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 FBXL6Q8N531 539 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC17A8Q8NDX2 589 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 CMASQ8NFW8 434 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 OR10H5Q8NGA6 315 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GRAPLQ8TC17 118 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PLEKHO2Q8TD55 490 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TRAPPC12Q8WVT3 735 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GTF3AQ92664 365 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms