RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DUS1LQ6P1R4 473 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 SPATA20Q8TB22 786 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 NUDT4Q9NZJ9 180 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 HEATR1Q9H583 2144 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 ALFQ53S48 1182 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 RALGPS1Q5JS13 557 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TTLQ8NG68 377 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TMEM134Q9H6X4 195 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ZNF446Q9NWS9 450 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TMEM94Q12767 1356 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 KRBOX1C9JBD0 128 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 URODP06132 367 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 FECHP22830 423 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 RPA3P35244 121 aaPredicted RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 PPP3R1P63098 170 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ACTC1P68032 377 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ACTA1P68133 377 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 PRR5P85299 388 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 IL27RAQ6UWB1 636 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 S100PBPQ96BU1 408 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 CCDC3Q9BQI4 270 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 NMRK2Q9NPI5 230 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 RUVBL1Q9Y265 456 aaKnown RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 CACNA1CQ13936 2221 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 FAM237BA0A1B0GVD1 139 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ATE1O95260 518 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SPARCP09486 303 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 APLP1P51693 650 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SEMA3AQ14563 771 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SLC4A11Q8NBS3 891 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 OR5K1Q8NHB7 308 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 OXER1Q8TDS5 423 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 AGLP35573 1532 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 RFXANKO14593 260 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TSPAN4O14817 238 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ITGB3P05106 788 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 IL3P08700 152 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SLC2A2P11168 524 aaPredicted RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 MTHFD1P11586 935 aaKnown RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 MBTD1Q05BQ5 628 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 DNM1P34Q6PK57 102 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 DSELQ8IZU8 1212 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 PNLDC1Q8NA58 520 aaKnown RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 MSANTD3Q96H12 275 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 UROC1Q96N76 676 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 COPS4Q9BT78 406 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 MRPL9Q9BYD2 267 aaKnown RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 CD163L1Q9NR16 1453 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 GPR182O15218 404 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 FABP3P05413 133 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 NAGLUP54802 743 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SEC23BQ15437 767 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 IQCCQ4KMZ1 466 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ATCAYQ86WG3 371 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 PIGXQ8TBF5 258 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ZUFSPQ96AP4 578 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 NT5DC2Q9H857 520 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SIAEQ9HAT2 523 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ETNK2Q9NVF9 386 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TOR4AQ9NXH8 423 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 ZIM2Q9NZV7 527 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 PTCH2Q9Y6C5 1203 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 M0QYT0 321 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SLC7A2P52569 658 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 MTAPQ13126 283 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 STARD3Q14849 445 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TAPT1Q6NXT6 567 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 CCDC71Q8IV32 467 aaPredicted RBP7.15□□□□□ -1.26
VPS53-204ENST00000437048 OR8H3Q8N146 312 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SELENOMQ8WWX9 145 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 MAPKAP1Q9BPZ7 522 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 POPDC2Q9HBU9 364 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 DPP3Q9NY33 737 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 MAT2BQ9NZL9 334 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 SLAIN2Q9P270 581 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TRPC4Q9UBN4 977 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 MINPP1Q9UNW1 487 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 TLR6Q9Y2C9 796 aa7.15□□□□□ -1.26
VPS53-204ENST00000437048 E2F8A0AVK6 867 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 NUDT19A8MXV4 375 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 GNPDA1P46926 289 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 ATP4BP51164 291 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 ZNF404Q494X3 552 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 SLC22A17Q8WUG5 538 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 CCDC106Q9BWC9 280 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 C10orf71Q711Q0 1435 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 NAP1L6A6NFF2 107 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 IFNA10P01566 189 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 IFNA4P05014 189 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 RNH1P13489 461 aaKnown RBP7.15□□□□□ -1.27
VPS53-204ENST00000437048 AOC1P19801 751 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 SCNN1AP37088 669 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 KANK2Q63ZY3 851 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 TRIM36Q9NQ86 728 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 TSR3Q9UJK0 312 aaKnown RBP7.15□□□□□ -1.27
VPS53-204ENST00000437048 OR2AT4A6NND4 320 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 CDH1P12830 882 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 HOXA13P31271 388 aaPredicted RBP7.15□□□□□ -1.27
VPS53-204ENST00000437048 HALP42357 657 aa7.15□□□□□ -1.27
VPS53-204ENST00000437048 HAGHLQ6PII5 290 aaPredicted RBP7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms