RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RIOX1Q9H6W3 641 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SMURF1Q9HCE7 757 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 DNAJC28Q9NX36 388 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 C19orf25Q9UFG5 118 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 L1RE1Q9UN81 338 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ALDH4A1P30038 563 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RPS9P46781 194 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RAB15P59190 212 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CXCL9Q07325 125 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 HEPACAMQ14CZ8 416 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ALG10Q5BKT4 473 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 OTOP1Q7RTM1 612 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CLVS1Q8IUQ0 354 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CFAP206Q8IYR0 622 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TOP6BLQ8N6T0 577 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC43A3Q8NBI5 491 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 C12orf66Q96MD2 445 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM121BQ9BXQ6 578 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MUC13Q9H3R2 512 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ATXN10Q9UBB4 475 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 STOML2Q9UJZ1 356 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC27A5Q9Y2P5 690 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RIPK2O43353 540 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PSIP1O75475 530 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 HSD11B1P28845 292 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CCNFP41002 786 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ADAM8P78325 824 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PHF19Q5T6S3 580 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SLC9A4Q6AI14 798 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 POTEHQ6S545 545 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ARCQ7LC44 396 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ATXN2LQ8WWM7 1075 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TCEAL3Q969E4 200 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 NDC1Q9BTX1 674 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SRMSQ9H3Y6 488 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 USP27XA6NNY8 438 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SLC33A1O00400 549 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PDCD5O14737 125 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 KAT7O95251 611 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RPL22P35268 128 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SPAM1P38567 509 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PER3P56645 1201 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 OC90Q02509 493 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ITPK1Q13572 414 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 MED22Q15528 200 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ALG1LQ6GMV1 187 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PGM2L1Q6PCE3 622 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CHST9Q7L1S5 443 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PIWIL4Q7Z3Z4 852 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SETD7Q8WTS6 366 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 MYOCQ99972 504 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 KBTBD4Q9NVX7 518 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CFAP97Q9P2B7 532 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 FAM205CA6NFA0 338 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DNAJA2O60884 412 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CBFA2T3O75081 653 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SNAPC5O75971 98 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PIGNO95427 931 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ITGAVP06756 1048 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PTPN2P17706 415 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 OR1D2P34982 312 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GRIA3P42263 894 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GRIA4P48058 902 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PITPNAQ00169 270 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ITGA7Q13683 1181 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 EIF2S3LQ2VIR3 472 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 C5orf22Q49AR2 442 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ANO7Q6IWH7 933 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PIGXQ8TBF5 258 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SNRNP27Q8WVK2 155 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 KLHL6Q8WZ60 621 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TATDN2Q93075 761 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 NXPE2Q96DL1 559 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TDRD1Q9BXT4 1180 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TDP1Q9NUW8 608 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RAPGEFL1Q9UHV5 662 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CFL2Q9Y281 166 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ATXN2Q99700 1313 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SALL1Q9NSC2 1324 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CEP170BQ9Y4F5 1589 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 OR14I1A6ND48 311 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 C5orf60A6NFR6 353 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 BBIP1A8MTZ0 92 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 M0R129 80 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SEC24AO95486 1093 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RLN2P04090 185 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CTPS1P17812 591 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ZBTB6Q15916 424 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RGS21Q2M5E4 152 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CES3Q6UWW8 571 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DNAJB7Q7Z6W7 309 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 FAM129CQ86XR2 697 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 C7orf61Q8IZ16 206 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF548Q8NEK5 533 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TRPV5Q9NQA5 729 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CCDC59Q9P031 241 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 LRCH1Q9Y2L9 728 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GLYATL1P3A0A0U1RQE8 302 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SMIM35A0A1B0GVV1 85 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DBIP07108 87 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms