RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 SPOCK2Q92563 424 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 INPP5DQ92835 1189 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 UBE2E3Q969T4 207 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 RNF38Q9H0F5 515 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 SNX15Q9NRS6 342 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 FBXL12Q9NXK8 326 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 VTI1BQ9UEU0 232 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 LIMD1Q9UGP4 676 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 EIF3LQ9Y262 564 aaKnown RBP8.48□□□□□ -1.05
SYNE1-211ENST00000413186 L3MBTL1Q9Y468 752 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 MFHAS1Q9Y4C4 1052 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 KANSL1LA0AUZ9 987 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 CFLARO15519 480 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 SNX3O60493 162 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 GUCA1CO95843 209 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 HMGA1P17096 107 aaKnown RBP8.48□□□□□ -1.05
SYNE1-211ENST00000413186 IDSP22304 550 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 BLKP51451 505 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 LIMK2P53671 638 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 PDK4Q16654 411 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 ZNF805Q5CZA5 627 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 PAGE2BQ5JRK9 111 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 TXNDC11Q6PKC3 985 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 LIMS2Q7Z4I7 341 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 PHF21BQ96EK2 531 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 PRICKLE1Q96MT3 831 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-211ENST00000413186 MRPL1Q9BYD6 325 aaKnown RBP8.48□□□□□ -1.05
SYNE1-211ENST00000413186 FAM53CQ9NYF3 392 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 CLCA2Q9UQC9 943 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 TDRKHQ9Y2W6 561 aaKnown RBP8.48□□□□□ -1.05
SYNE1-211ENST00000413186 PCDHGA3Q9Y5H0 932 aa8.48□□□□□ -1.05
SYNE1-211ENST00000413186 DOCK5Q9H7D0 1870 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 PTPRFP10586 1907 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 GOT2P00505 430 aaKnown RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 SHBGP04278 402 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 CXCR2P25025 360 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 NMBRP28336 390 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 PTPN4P29074 926 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 NTSR1P30989 418 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ABCG1P45844 678 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 SKP1P63208 163 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 STX5Q13190 355 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 SGO1Q5FBB7 561 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 CACHD1Q5VU97 1274 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 SERPINA9Q86WD7 417 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 GALNT13Q8IUC8 556 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 MFSD6LQ8IWD5 586 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 NUS1Q96E22 293 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ZFYVE19Q96K21 471 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 FAM129BQ96TA1 746 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 NDNQ99608 321 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 RBBP8Q99708 897 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 MYOCQ99972 504 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 PDCD10Q9BUL8 212 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 TRIM45Q9H8W5 580 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 WDR41Q9HAD4 459 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 MRM3Q9HC36 420 aaKnown RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 POLR3BQ9NW08 1133 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 MBD2Q9UBB5 411 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 HEY2Q9UBP5 337 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 TCRBV5S1A1TA0A578 114 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 RFXAPO00287 272 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ANGPT2O15123 496 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 THRAP10827 490 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ILF3Q12906 894 aaKnown RBP eCLIP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 HECTD2Q5U5R9 776 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 KLHL35Q6PF15 583 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 RSPO2Q6UXX9 243 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 PIWIL4Q7Z3Z4 852 aaKnown RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 EXOC3L1Q86VI1 746 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 TERB1Q8NA31 727 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 TLCD1Q96CP7 247 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 CDKN2AIPNLQ96HQ2 116 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 RAD21L1Q9H4I0 556 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ZDHHC18Q9NUE0 388 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 DNAJC16Q9Y2G8 782 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 SCN10AQ9Y5Y9 1956 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 B2RBV5 119 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 BIRC5O15392 142 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 SEMA3DO95025 777 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 PGLSO95336 258 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 OCM2P0CE71 109 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 OCMP0CE72 109 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 TCF3P15923 654 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 COPAP53621 1224 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ALDH18A1P54886 795 aaKnown RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 DDX39BQ13838 428 aaKnown RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 CBFBQ13951 182 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ADGRD1Q6QNK2 874 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ZDHHC24Q6UX98 284 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ARHGAP36Q6ZRI8 547 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 TRABD2AQ86V40 505 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 C11orf74Q86VG3 221 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ARFGAP1Q8N6T3 406 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ZNF75CPQ92670 426 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 LINC00597Q9H2U6 94 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 ALG9Q9H6U8 611 aa8.47□□□□□ -1.05
SYNE1-211ENST00000413186 COPS7BQ9H9Q2 264 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 CHMP1AQ9HD42 196 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-211ENST00000413186 KCNK4Q9NYG8 393 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms