RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TBC1D24Q9ULP9 559 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 IRAK3Q9Y616 596 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 BCKDKO14874 412 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 RPP40O75818 363 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 CCNYL3P0C7X3 344 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 IGFBP5P24593 272 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 CTSKP43235 329 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 RPS9P46781 194 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 JAM2P57087 298 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 UGCGQ16739 394 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 RFTN2Q52LD8 501 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 DCLRE1AQ6PJP8 1040 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 AGMOQ6ZNB7 445 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 CHCHD4Q8N4Q1 142 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 MEIOBQ8N635 442 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 PJA1Q8NG27 643 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 CENPNQ96H22 339 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 PFDN5Q99471 154 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 RNF38Q9H0F5 515 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 RNF19AQ9NV58 838 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 AKAP7Q9P0M2 348 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 POFUT2Q9Y2G5 429 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 PCDHB1Q9Y5F3 818 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 C2orf71A6NGG8 1288 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 MANSC4A6NHS7 340 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM25EA8MYX2 175 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 PRMT5O14744 637 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 PLIN3O60664 434 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 KDM4BO94953 1096 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 LRATO95237 230 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 PKMP14618 531 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 MAPK9P45984 424 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 MRPS6P82932 125 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 INTS6LQ5JSJ4 861 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 C6orf52Q5T4I8 152 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC26A9Q7LBE3 791 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC34A3Q8N130 599 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 GRIN3AQ8TCU5 1115 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 COPS5Q92905 334 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 TUBGCP5Q96RT8 1024 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC39A3Q9BRY0 314 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 TTYH3Q9C0H2 523 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 BRD9Q9H8M2 597 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 NDOR1Q9UHB4 597 aa10.21□□□□□ -0.78
LIMCH1-203ENST00000396595 H7C2Y5 167 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM155BO75949 473 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FADS2O95864 444 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PCSK2P16519 638 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 RPL4P36578 427 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 GPR1P46091 355 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SEMA5AQ13591 1074 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 HKDC1Q2TB90 917 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ARL13AQ5H913 290 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 C9orf131Q5VYM1 1079 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM131AQ6UXB0 335 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 MON1AQ86VX9 555 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TOR1AIP2Q8NFQ8 470 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PPM1MQ96MI6 270 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SDCBP2Q9H190 292 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 RHBGQ9H310 441 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TRIT1Q9H3H1 467 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 NXF3Q9H4D5 531 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 MRPL17Q9NRX2 175 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PTTG2Q9NZH5 202 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PCDHGC3Q9UN70 934 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SNX7Q9UNH6 387 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TRAV19A0A0A6YYK7 116 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 URADA6NGE7 173 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 KCNU1A8MYU2 1149 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 B4GALT5O43286 388 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PRKACAP17612 351 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 KIR3DL1P43629 444 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CPTPQ5TA50 214 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 GARNL3Q5VVW2 1013 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 DEF8Q6ZN54 512 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 RNF44Q7L0R7 432 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PIGWQ7Z7B1 504 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 DENND1CQ8IV53 801 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 DQX1Q8TE96 717 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 HEXDCQ8WVB3 486 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ST6GALNAC4Q9H4F1 302 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 LRTM1Q9HBL6 345 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FETUBQ9UGM5 382 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 MGAT4AQ9UM21 535 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 C5orf60A6NFR6 353 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TBL1XO60907 577 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 AP2A1O95782 977 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 HDCP19113 662 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ITIH1P19827 911 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ACADLP28330 430 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PTGIRP43119 386 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 OMPP47874 163 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CEBPGP53567 150 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 NRG3P56975 720 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 RAB15P59190 212 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 GBE1Q04446 702 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ELP6Q0PNE2 266 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 AP5B1Q2VPB7 878 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ESRP1Q6NXG1 681 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 NCCRP1Q6ZVX7 275 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms