RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CENPKQ9BS16 269 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 AARSD1Q9BTE6 412 aaKnown RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 FAM192AQ9GZU8 254 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 RSPH9Q9H1X1 276 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 MID1IP1Q9NPA3 183 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 RNF112Q9ULX5 631 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 MYLKQ15746 1914 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 STX16-NPEPL1H3BU86 382 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CLDN11O75508 207 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 BCAS2O75934 225 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CD1DP15813 335 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CD300CQ08708 224 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 ADGRE1Q14246 886 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 VEPH1Q14D04 833 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TRIM60Q495X7 471 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 HECTD3Q5T447 861 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CHSY3Q70JA7 882 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 C11orf96Q7Z7L8 435 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 STAG3L4Q8TBR4 150 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 LZICQ8WZA0 190 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 C19orf60Q96EN9 201 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 EGLN2Q96KS0 407 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 GCNAQ96QF7 691 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 EFHD1Q9BUP0 239 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TFB2MQ9H5Q4 396 aaKnown RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 COPS7BQ9H9Q2 264 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 ZFP37Q9Y6Q3 630 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 ATP6AP2A0A1C7CYW4 349 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 A6NL46 340 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 H3BNX3 289 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 ATP6AP2O75787 350 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CD1EP15812 388 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 FMO4P31512 558 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 STC1P52823 247 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 C1QTNF8P60827 252 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 UNC50Q53HI1 259 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 OGFRL1Q5TC84 451 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 REP15Q6BDI9 236 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CCBE1Q6UXH8 406 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 RNF111Q6ZNA4 994 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TMEM126BQ8IUX1 230 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 DENND1CQ8IV53 801 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 FBXO39Q8N4B4 442 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 RIN3Q8TB24 985 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 DOCK4Q8N1I0 1966 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 KIAA0100Q14667 2235 aaKnown RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 A0A0D9SEW6 157 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CAPN8A6NHC0 703 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 SYCE1LA8MT33 242 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 A8MX80 341 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 UBXN8O00124 270 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 AZIN1O14977 448 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 MUSKO15146 869 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 INSIG1O15503 277 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 NRP2O60462 931 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 KCNJ13O60928 360 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 IRF1P10914 325 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 PCNAP12004 261 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 NFKB2Q00653 900 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 FOLH1Q04609 750 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 IHHQ14623 411 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 STK11Q15831 433 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 SAMD4BQ5PRF9 694 aaKnown RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 LAYNQ6UX15 382 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 RFPL4BQ6ZWI9 263 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TAS1R1Q7RTX1 841 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 LPCAT1Q8NF37 534 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 ADCY4Q8NFM4 1077 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 OR4K2Q8NGD2 314 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 NCSTNQ92542 709 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 DCUN1D1Q96GG9 259 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 PSKH2Q96QS6 385 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TUBGCP5Q96RT8 1024 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TCF12Q99081 682 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 MGME1Q9BQP7 344 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TMEM175Q9BSA9 504 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 MUC3BQ9H195 1237 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 CRISPLD1Q9H336 500 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 NLE1Q9NVX2 485 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-204ENST00000392003 TRPM5Q9NZQ8 1165 aa9.59□□□□□ -0.87
COL6A3-204ENST00000392003 ZBBXA8MT70 800 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 CBX4O00257 560 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 VPS26AO75436 327 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 GJB3O75712 270 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 CHEK2O96017 543 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ZDHHC11BP0C7U3 371 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF37AP17032 561 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 HSPA13P48723 471 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ATP4BP51164 291 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ATP6V0D1P61421 351 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TRIM25Q14258 630 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PDK3Q15120 406 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TAF1AQ15573 450 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PPP1R3AQ16821 1122 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 EML3Q32P44 896 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ANKS6Q68DC2 871 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF549Q6P9A3 640 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TMEM207Q6UWW9 146 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TMEM173Q86WV6 379 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms