RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NFATC2Q13469 925 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 PCLAFQ15004 111 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF789Q5FWF6 425 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 FAM46CQ5VWP2 391 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 C16orf46Q6P387 395 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 FAM151BQ6UXP7 276 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 DPPA4Q7L190 304 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 TTC7BQ86TV6 843 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 CEP97Q8IW35 865 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 PLCD3Q8N3E9 789 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 ENDOVQ8N8Q3 282 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 ACVR1CQ8NER5 493 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 OR6Y1Q8NGX8 325 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 DTX3LQ8TDB6 740 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 STON2Q8WXE9 905 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 MRPL57Q9BQC6 102 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 TMEM245Q9H330 911 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 RNPEPL1Q9HAU8 725 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 DNAJC28Q9NX36 388 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 CCDC189A1A4V9 331 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 C16orf96A6NNT2 1141 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 F8W8V4 182 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 KPNA3O00505 521 aaPredicted RBP18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 PKMP14618 531 aaKnown RBP18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 BPIP17213 487 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 IRF9Q00978 393 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 ADGRE1Q14246 886 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 LRRC8EQ6NSJ5 796 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 PSAPL1Q6NUJ1 521 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 TMPRSS6Q8IU80 811 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 ST13P5Q8NFI4 369 aaPredicted RBP18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 KCTD4Q8WVF5 259 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 MYLIPQ8WY64 445 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 VOPP1Q96AW1 172 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 CCDC126Q96EE4 140 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 P2RY13Q9BPV8 354 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 C1QTNF1Q9BXJ1 281 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 CLPBQ9H078 707 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 MRPL46Q9H2W6 279 aaKnown RBP18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 IL26Q9NPH9 171 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 TRPV5Q9NQA5 729 aa18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 APOBEC2Q9Y235 224 aaKnown RBP18.07■□□□□ 0.48
CCDC88C-203ENST00000389856 PSMD11O00231 422 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 ARNTLO00327 626 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 PRMT5O14744 637 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 GSC2O15499 205 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 RNASEH1O60930 286 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 RALBP11234 206 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 HNRNPLP14866 589 aaKnown RBP eCLIP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 TIMP2P16035 220 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 RPS3P23396 243 aaKnown RBP eCLIP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 SP100P23497 879 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 FMO4P31512 558 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 DCDC1P59894 354 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 IRX4P78413 519 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 SMAD4Q13485 552 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 ACAP2Q15057 778 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 DNAL1Q4LDG9 190 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 C9orf64Q5T6V5 341 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 TSPAN33Q86UF1 283 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 PLD6Q8N2A8 252 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 EID2BQ96D98 161 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 OLFM1Q99784 485 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 CADM1Q9BY67 442 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 NMUR2Q9GZQ4 415 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 C1orf21Q9H246 121 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 PCDH12Q9NPG4 1184 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 NFKBIL1Q9UBC1 381 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 TAGLN3Q9UI15 199 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 GNPTGQ9UJJ9 305 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 PPM1HQ9ULR3 514 aa18.06■□□□□ 0.48
CCDC88C-203ENST00000389856 TRBV5-4A0A0C4DH59 114 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 E5RI56 91 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 MAGEC1O60732 1142 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 SNUPNO95149 360 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 CTSLP07711 333 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 CHRM1P11229 460 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 SPINT3P49223 89 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 ABCE1P61221 599 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 PTSQ03393 145 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 PTPRRQ15256 657 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 CES4AQ5XG92 561 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 SDE2Q6IQ49 451 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 FBXL19Q6PCT2 694 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 ZYG11AQ6WRX3 759 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 SERPINA9Q86WD7 417 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 CENPLQ8N0S6 344 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 NKAPQ8N5F7 415 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 PIP4K2CQ8TBX8 421 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 KCNV2Q8TDN2 545 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 KCNJ9Q92806 393 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 RAB7BQ96AH8 199 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 MCUR1Q96AQ8 359 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 C8orf33Q9H7E9 229 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 DCLRE1BQ9H816 532 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 TRMT6Q9UJA5 497 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 DNAJC16Q9Y2G8 782 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 C15orf41Q9Y2V0 281 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 A8MUI8 341 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 SPECC1L-ADORA2AF8WAN1 911 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms