RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 GPR17Q13304 367 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 PAGE2BQ5JRK9 111 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 AAGABQ6PD74 315 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 RNF19BQ6ZMZ0 732 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 ARFGAP1Q8N6T3 406 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 ZNF366Q8N895 744 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 ASZ1Q8WWH4 475 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 BBS4Q96RK4 519 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 OXSMQ9NWU1 459 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 POMPQ9Y244 141 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 PCDHB1Q9Y5F3 818 aa13.12□□□□□ -0.31
NPHP4-203ENST00000378169 A0A1W2PQ45 241 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 A0A1W2PQY0 241 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 H0Y858 1186 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 RECQL5O94762 991 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 SNUPNO95149 360 aaKnown RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 FAM163BP0C2L3 166 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 IGFBP4P22692 258 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 PPP2R1BP30154 601 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 CCR10P46092 362 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 POLD2P49005 469 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 CREMQ03060 361 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 RUNX1T1Q06455 604 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 NAE1Q13564 534 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 ZCCHC8Q6NZY4 707 aaKnown RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 CHST9Q7L1S5 443 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 RELL1Q8IUW5 271 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 HOMEZQ8IX15 550 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 PNPT1Q8TCS8 783 aaKnown RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 CCDC28BQ9BUN5 200 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 FAM83DQ9H4H8 585 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 SCML2Q9UQR0 700 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 COL16A1Q07092 1604 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 H3BN98 237 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 KPNA5O15131 536 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 ITGB1P05556 798 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 GNPDA1P46926 289 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 SLC18A1P54219 525 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 C6orf89Q6UWU4 347 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 NAT14Q8WUY8 206 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 AP2M1Q96CW1 435 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 FEM1CQ96JP0 617 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 CCDC3Q9BQI4 270 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 TLE6Q9H808 572 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 ADPRHL2Q9NX46 363 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 C6orf203Q9P0P8 240 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 N4BP2Q86UW6 1770 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 LINC00854A0A1B0GVQ3 168 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 NBNO60934 754 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 FGBP02675 491 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 ETS2P15036 469 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 EPORP19235 508 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 PEX2P28328 305 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 HPCAL1P37235 193 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 THOP1P52888 689 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 AP1S1P61966 158 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 TRIM60Q495X7 471 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 PHTF2Q8N3S3 785 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 ZNF513Q8N8E2 541 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-203ENST00000378169 MPP4Q96JB8 637 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 KLHL32Q96NJ5 620 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 TRAPPC9Q96Q05 1148 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 CDK15Q96Q40 435 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 PTPN18Q99952 460 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 FLRT1Q9NZU1 646 aa13.11□□□□□ -0.31
NPHP4-203ENST00000378169 ZBTB42B2RXF5 422 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 MTX2O75431 263 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 HAPLN1P10915 354 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-203ENST00000378169 DEPDC1Q5TB30 811 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 CES5AQ6NT32 575 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 RAVER1Q8IY67 606 aaKnown RBP13.1□□□□□ -0.31
NPHP4-203ENST00000378169 PGAM4Q8N0Y7 254 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 ZBTB2Q8N680 514 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 REPS1Q96D71 796 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 KCTD5Q9NXV2 234 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 TBC1D30Q9Y2I9 924 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 MYH7BA7E2Y1 1941 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 ADAMTS7Q9UKP4 1686 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 CARNS1A5YM72 827 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 C1QTNF3-AMACRE9PGA6 284 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 APOA1P02647 267 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 ALDOAP04075 364 aaKnown RBP13.1□□□□□ -0.31
NPHP4-203ENST00000378169 MAPK9P45984 424 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 PLA2G4EQ3MJ16 856 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 CMTM8Q8IZV2 173 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 NPWQ8N729 165 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 UBR7Q8N806 425 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 PNPLA1Q8N8W4 532 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 OR2T12Q8NG77 320 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 PYCR2Q96C36 320 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 C8orf48Q96LL4 319 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 FCRL3Q96P31 734 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-203ENST00000378169 TCF12Q99081 682 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 RHBGQ9H310 441 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 REEP1Q9H902 201 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 RNF186Q9NXI6 227 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 ZDHHC2Q9UIJ5 367 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 SPACA6W5XKT8 324 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 C4AP0C0L4 1744 aa13.1□□□□□ -0.31
NPHP4-203ENST00000378169 A8MT66 165 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms