RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SCARF2Q96GP6 870 aaPredicted RBP13.24□□□□□ -0.29
VPS28-202ENST00000377348 DDX47Q9H0S4 455 aaKnown RBP13.24□□□□□ -0.29
VPS28-202ENST00000377348 OR2AG1Q9H205 316 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 CASS4Q9NQ75 786 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 SIRPGQ9P1W8 387 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 ZNHIT2Q9UHR6 403 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 GOLGA6L10A0A0M3HER8 536 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 PPFIA2O75334 1257 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 PRAMEF1O95521 474 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 CKMT2P17540 419 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 SPINK2P20155 84 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 FNTAP49354 379 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 CLDN6P56747 220 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 XIAPP98170 497 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 CTBSQ01459 385 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 PEX6Q13608 980 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 ZCCHC8Q6NZY4 707 aaKnown RBP13.23□□□□□ -0.29
VPS28-202ENST00000377348 SLC30A9Q6PML9 568 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 C4orf22Q6V702 233 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 SYT10Q6XYQ8 523 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 SLC35F3Q8IY50 421 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 FAM181AQ8N9Y4 354 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 KYQ8NBH2 561 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 FAM46DQ8NEK8 389 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 GDAP1Q8TB36 358 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 GPBAR1Q8TDU6 330 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 VPS35Q96QK1 796 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 OR2M4Q96R27 311 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 BOCQ9BWV1 1114 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 TRIM39Q9HCM9 518 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 SPATS2LQ9NUQ6 558 aaKnown RBP13.23□□□□□ -0.29
VPS28-202ENST00000377348 TRNAU1APQ9NX07 287 aaKnown RBP13.23□□□□□ -0.29
VPS28-202ENST00000377348 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.23□□□□□ -0.29
VPS28-202ENST00000377348 VPS18Q9P253 973 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 GULP1Q9UBP9 304 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 GPR34Q9UPC5 381 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 APOBEC2Q9Y235 224 aaKnown RBP13.23□□□□□ -0.29
VPS28-202ENST00000377348 NEU2Q9Y3R4 380 aa13.23□□□□□ -0.29
VPS28-202ENST00000377348 B4DGG1 531 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 HYAL3O43820 417 aaPredicted RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 NUAK1O60285 661 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 SRP72O76094 671 aaKnown RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 DKK1O94907 266 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 PRSS56P0CW18 603 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 CKMT1AP12532 417 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 ACP1P24666 158 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 CASQ1P31415 396 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 MC4RP32245 332 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 SESN2P58004 480 aaPredicted RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 ETF1P62495 437 aaKnown RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 PDE1BQ01064 536 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 ILF3Q12906 894 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS28-202ENST00000377348 GPRC6AQ5T6X5 926 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 ANKRD22Q5VYY1 191 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 GUSBP11Q6P575 273 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 CRTC3Q6UUV7 619 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 DHRS13Q6UX07 377 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 CHST15Q7LFX5 561 aaPredicted RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 KLHL7Q8IXQ5 586 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 CHCHD4Q8N4Q1 142 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 ZNF398Q8TD17 642 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 DTX3LQ8TDB6 740 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 NAT14Q8WUY8 206 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 GSDMCQ9BYG8 508 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 FAM96AQ9H5X1 160 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 ASB8Q9H765 288 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 EIF2B3Q9NR50 452 aaKnown RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 NLE1Q9NVX2 485 aaPredicted RBP13.22□□□□□ -0.29
VPS28-202ENST00000377348 TAAR2Q9P1P5 351 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 SLC2A6Q9UGQ3 507 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 APPL1Q9UKG1 709 aa13.22□□□□□ -0.29
VPS28-202ENST00000377348 ASPMQ8IZT6 3477 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.21□□□□□ -0.29
VPS28-202ENST00000377348 CPED1A4D0V7 1026 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 MROH6A6NGR9 719 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 GRID2O43424 1007 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 RFPL3O75679 317 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 TMEM63AO94886 807 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 CDK14O94921 469 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 ECEL1O95672 775 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 GAS8O95995 478 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 ACP5P13686 325 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 TPSB2P20231 275 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 PMLP29590 882 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 HADHAP40939 763 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 ACTR1BP42025 376 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 CDKN1CP49918 316 aaPredicted RBP13.21□□□□□ -0.29
VPS28-202ENST00000377348 ARSDP51689 593 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 ACTR1AP61163 376 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 CRADDP78560 199 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 TMEM115Q12893 351 aaPredicted RBP13.21□□□□□ -0.29
VPS28-202ENST00000377348 NFATC2Q13469 925 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 ITGA9Q13797 1035 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 KCNJ11Q14654 390 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 NR0B2Q15466 257 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 TPSAB1Q15661 275 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 PLA2G4EQ3MJ16 856 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 LVRNQ6Q4G3 990 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 ZNF534Q76KX8 674 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 EFL1Q7Z2Z2 1120 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms