RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 INTS12Q96CB8 462 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 WDFY2Q96P53 400 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 NDST4Q9H3R1 872 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 MMP25Q9NPA2 562 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 TMEM30AQ9NV96 361 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 TBC1D29Q9UFV1 150 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 LIMA1Q9UHB6 759 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 A4GNTQ9UNA3 340 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CAPN7Q9Y6W3 813 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 LRRC53A6NM62 1247 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 PTGES3LE9PB15 166 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CCNDBP1O95273 360 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 MT-CYBP00156 380 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 HOXD13P35453 343 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 GNL1P36915 607 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 OLR1P78380 273 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 FRG1Q14331 258 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 KCTD2Q14681 263 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 RNPS1Q15287 305 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 TCTN1Q2MV58 587 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 ACCSLQ4AC99 568 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CPLX2Q6PUV4 134 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CYP20A1Q6UW02 462 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 C16orf54Q6UWD8 224 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF852Q6ZMS4 543 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 KRTAP7-1Q8IUC3 87 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 SPATA6LQ8N4H0 392 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 FRMD1Q8N878 549 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CCDC89Q8N998 374 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 SMARCE1Q969G3 411 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CDCA5Q96FF9 252 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 GRAMD2BQ96HH9 432 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 MTERF1Q99551 399 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 H2AFJQ9BTM1 129 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CENPOQ9BU64 300 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 C1QTNF5Q9BXJ0 243 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 MUC13Q9H3R2 512 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 PRKRIP1Q9H875 184 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 SCPEP1Q9HB40 452 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 HCFC1R1Q9NWW0 138 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 VPS28Q9UK41 221 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 RABGAP1Q9Y3P9 1069 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 ANTXRLA6NF34 631 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 EIF3CLB5ME19 914 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 AHCYL1O43865 530 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 FTCDO95954 541 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 TFP02787 698 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 EIF2S1P05198 315 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 ALOX12P18054 663 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 CD58P19256 250 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 ANOS1P23352 680 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 PPARGP37231 505 aaPredicted RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 METAP2P50579 478 aaKnown RBP eCLIP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 CEBPZQ03701 1054 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 CCNG2Q16589 344 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 COL28A1Q2UY09 1125 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 KRT71Q3SY84 523 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 TXNDC8Q6A555 127 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 DUS1LQ6P1R4 473 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 FAM122CQ6P4D5 195 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 TSSK4Q6SA08 328 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 LINGO2Q7L985 606 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 DGLUCYQ7Z3D6 616 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 NFE4Q86UQ8 179 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 KMT5CQ86Y97 462 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 WDTC1Q8N5D0 677 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 ACVR1CQ8NER5 493 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 PSPC1Q8WXF1 523 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 TAF15Q92804 592 aaKnown RBP eCLIP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 GTF3C6Q969F1 213 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 RHBDF1Q96CC6 855 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 RSRC1Q96IZ7 334 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 NUDT16L1Q9BRJ7 211 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 POLR3CQ9BUI4 534 aaPredicted RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 EGLN1Q9GZT9 426 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 POLR1BQ9H9Y6 1135 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 SEBOXQ9HB31 216 aaPredicted RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 PCDH9Q9HC56 1237 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 HINT3Q9NQE9 182 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 MCM9Q9NXL9 1143 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 EHD2Q9NZN4 543 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 ADD3Q9UEY8 706 aaKnown RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 HAO1Q9UJM8 370 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF215Q9UL58 517 aaPredicted RBP2.13□□□□□ -2.07
VPS13A-206ENST00000376646 PADI3Q9ULW8 664 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 AMDHD2Q9Y303 409 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 LYVE1Q9Y5Y7 322 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 NOTCH2Q04721 2471 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 SNED1Q8TER0 1413 aa2.13□□□□□ -2.07
VPS13A-206ENST00000376646 A0A1W2PS18 150 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 LIPT2A6NK58 231 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 TTC36A6NLP5 189 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 DVL1O14640 695 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 SEC14L5O43304 696 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 FIBPO43427 364 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF883P0CG24 379 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 IRF1P10914 325 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 GM2AP17900 193 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 MAOAP21397 527 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms