RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CLPXO76031 633 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 METTL18O95568 372 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TACR2P21452 398 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ATP13A5Q4VNC0 1218 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 SPATA6Q9NWH7 488 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 FKBPLQ9UIM3 349 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 MFSD11O43934 449 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 NOBOXO60393 691 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 RPP14O95059 124 aaKnown RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ZNF806P0C7X5 589 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 POLR2CP19387 275 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 VLDLRP98155 873 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CBX3Q13185 183 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 NOXRED1Q6NXP6 359 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 SLC24A5Q71RS6 500 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 LCN9Q8WX39 176 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 MYO19Q96H55 970 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CCNL2Q96S94 520 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 MIPEPQ99797 713 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 PRRG3Q9BZD7 231 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TNS2Q63HR2 1409 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 NEMP2A6NFY4 417 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 INPPL1O15357 1258 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 MBTD1Q05BQ5 628 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TRAF3Q13114 568 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CLEC12AQ5QGZ9 265 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 AGBL2Q5U5Z8 902 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CCDC54Q8NEL0 328 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 MAGEB18Q96M61 343 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 GSDMCQ9BYG8 508 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 STOX2Q9P2F5 926 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 STK39Q9UEW8 545 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TELO2Q9Y4R8 837 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 KIF21AQ7Z4S6 1674 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ADH1CP00326 375 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 PLATP00750 562 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 PGAM1P18669 254 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 AXLP30530 894 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CAPZA1P52907 286 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TSGA10IPQ3SY00 556 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ANKRD52Q8NB46 1076 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 PHF10Q8WUB8 498 aaKnown RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 LENG9Q96B70 501 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 C1GALT1C1Q96EU7 318 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 NUAK2Q9H093 628 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 SRMSQ9H3Y6 488 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TAS2R1Q9NYW7 299 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 PLA2R1Q13018 1463 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 OTOL1A6NHN0 477 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ULK1O75385 1050 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 OR7A10O76100 309 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 OPN1SWP03999 348 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 NEK3P51956 506 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 SH3RF1Q7Z6J0 888 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 IFNL1Q8IU54 200 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TAGLN3Q9UI15 199 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 BLOC1S6Q9UL45 172 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TESMINQ9Y4I5 508 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CLASP1Q7Z460 1538 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 TRIM64A6NGJ6 449 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ITGAVP06756 1048 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ATP4AP20648 1035 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ACVRL1P37023 503 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ALG11Q2TAA5 492 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ARMCX4Q5H9R4 360 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 SPRYD7Q5W111 196 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 FAM9CQ8IZT9 166 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 FBRSQ9HAH7 460 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 RPRD1BQ9NQG5 326 aaKnown RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 GMPPBQ9Y5P6 360 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 KDM5AP29375 1690 aaKnown RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 GOT2P00505 430 aaKnown RBP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 SPATA31C1P0DKV0 1188 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 HOXB2P14652 356 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 CRABP2P29373 138 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 HPCAL1P37235 193 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 PTENP60484 403 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ZNF730Q6ZMV8 503 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 ANKRD23Q86SG2 305 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 AMIGO3Q86WK7 504 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 AGGF1Q8N302 714 aaeCLIP7.31□□□□□ -1.24
VPS13A-202ENST00000357409 EPS8L1Q8TE68 723 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 OMA1Q96E52 524 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 MEGF6O75095 1541 aa7.31□□□□□ -1.24
VPS13A-202ENST00000357409 GLYATL1P3A0A0U1RQE8 302 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 URADA6NGE7 173 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 KCNU1A8MYU2 1149 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TRIM24O15164 1050 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 ASNA1O43681 348 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MCL1Q07820 350 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SLC10A7Q0GE19 358 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SLC22A9Q8IVM8 553 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 TMEM151BQ8IW70 566 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 BEND7Q8N7W2 519 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-202ENST00000357409 HHIPQ96QV1 700 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 CPNE1Q99829 537 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 SLC15A5A6NIM6 579 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 MSCO60682 206 aa7.3□□□□□ -1.24
VPS13A-202ENST00000357409 KERAO60938 352 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms