RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 E2F2Q14209 437 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 NKG7Q16617 165 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 COQ5Q5HYK3 327 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 AGAP9Q5VTM2 703 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 FKBP1CQ5VVH2 108 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 UBE2UQ5VVX9 321 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 FAM160B1Q5W0V3 765 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 STEAP3Q658P3 488 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 NAPEPLDQ6IQ20 393 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 BEND5Q7L4P6 421 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ADCK1Q86TW2 530 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 FAM83AQ86UY5 434 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 LACC1Q8IV20 430 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ABI1Q8IZP0 508 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CLYBLQ8N0X4 340 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 DTWD1Q8N5C7 304 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 RPL3LQ92901 407 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 NT5C3BQ969T7 300 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 L3HYPDHQ96EM0 354 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 AURKBQ96GD4 344 aaPredicted RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 C8orf37Q96NL8 207 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 NSUN5Q96P11 429 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 NPY6RQ99463 290 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CCDC90BQ9GZT6 254 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ACAD9Q9H845 621 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 MOV10Q9HCE1 1003 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 NECTIN3Q9NQS3 549 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 POLG2Q9UHN1 485 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 UTS2RQ9UKP6 389 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 TRHDEQ9UKU6 1024 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SNX10Q9Y5X0 201 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SNX5Q9Y5X3 404 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 GPR45Q9Y5Y3 372 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SBF1O95248 1867 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 TSC2P49815 1807 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 FAM92AA1XBS5 289 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ASNA1O43681 348 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 DYRK3O43781 588 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 PEX10O60683 326 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CNTN5O94779 1100 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SEC24AO95486 1093 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 HPRP00739 348 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 LINC00032P0C843 101 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CHRNB1P11230 501 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 LMO2P25791 158 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 HTR1EP28566 365 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CHRNA4P43681 627 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SEPHS1P49903 392 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SNX16P57768 344 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 EEFSECP57772 596 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 CCNA1P78396 465 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 PPP2R2BQ00005 443 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ADIGQ0VDE8 80 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 LAPTM5Q13571 262 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 RCAN2Q14206 197 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SELPLGQ14242 412 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 AASDHQ4L235 1098 aaPredicted RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 ZNF484Q5JVG2 852 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 VARS2Q5ST30 1063 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 TTC23Q5W5X9 447 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 DESI1Q6ICB0 168 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 HFE2Q6ZVN8 426 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 TAS2R42Q7RTR8 314 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 PAGE2Q7Z2X7 111 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 RALGPS2Q86X27 583 aaPredicted RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 SLC22A9Q8IVM8 553 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 TTC39CQ8N584 583 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 FAM83FQ8NEG4 500 aaPredicted RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 PJA1Q8NG27 643 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 OR6B3Q8NGW1 331 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CNIH3Q8TBE1 160 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CALML6Q8TD86 181 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ISG20Q96AZ6 181 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 PTERQ96BW5 349 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 FEM1AQ9BSK4 669 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 TRMOQ9BU70 441 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 OSBPL10Q9BXB5 764 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 RNF38Q9H0F5 515 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 TREX1Q9NSU2 369 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 POLR3BQ9NW08 1133 aaPredicted RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 INTS6Q9UL03 887 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 INVSQ9Y283 1065 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 PHIPQ8WWQ0 1821 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ANKRD12Q6UB98 2062 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ZBBXA8MT70 800 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TBX1O43435 398 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SCO2O43819 266 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 EEDO75530 441 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 DAB1O75553 588 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 USP2O75604 605 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 DNAJB5O75953 348 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 WISP3O95389 354 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 NDST3O95803 873 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 DLGAP3O95886 979 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 NTRK1P04629 796 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ENO2P09104 434 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 RBP1P09455 135 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 MAGP20916 626 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ADRA1BP35368 520 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 CASP2P42575 452 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms