RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 LRTOMTQ8WZ04 291 aa15.33■□□□□ 0.05
UPF3B-202ENST00000345865 ZFRQ96KR1 1074 aaKnown RBP15.33■□□□□ 0.05
UPF3B-202ENST00000345865 GBP5Q96PP8 586 aa15.33■□□□□ 0.05
UPF3B-202ENST00000345865 EPS15L1Q9UBC2 864 aa15.33■□□□□ 0.05
UPF3B-202ENST00000345865 LHX3Q9UBR4 397 aa15.33■□□□□ 0.05
UPF3B-202ENST00000345865 AP4S1Q9Y587 144 aa15.33■□□□□ 0.05
UPF3B-202ENST00000345865 AP4B1Q9Y6B7 739 aa15.33■□□□□ 0.05
UPF3B-202ENST00000345865 TCRBV3S1A0A5B6 114 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 FXYD1O00168 92 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 NME4O00746 187 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 KLK8O60259 260 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 PQBP1O60828 265 aaKnown RBP15.33■□□□□ 0.04
UPF3B-202ENST00000345865 CSPG5O95196 566 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 ZNF26P17031 533 aaPredicted RBP15.33■□□□□ 0.04
UPF3B-202ENST00000345865 TRAP1Q12931 704 aaKnown RBP15.33■□□□□ 0.04
UPF3B-202ENST00000345865 ZRANB3Q5FWF4 1079 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 IGSF21Q96ID5 467 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 CAPNS2Q96L46 248 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 TEX37Q96LM6 180 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 CEP295NLQ96MC4 621 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 SDR39U1Q9NRG7 319 aaPredicted RBP15.33■□□□□ 0.04
UPF3B-202ENST00000345865 PCTPQ9UKL6 214 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 FCF1Q9Y324 198 aaKnown RBP15.33■□□□□ 0.04
UPF3B-202ENST00000345865 TANC1Q9C0D5 1861 aa15.33■□□□□ 0.04
UPF3B-202ENST00000345865 PLXNA4Q9HCM2 1894 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 STX7O15400 261 aaKnown RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 LBPP18428 481 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 CA5AP35218 305 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 SAMD4BQ5PRF9 694 aaKnown RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 C6orf52Q5T4I8 152 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 ATXN7L2Q5T6C5 722 aaPredicted RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 THEMIS2Q5TEJ8 643 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 SCIMPQ6UWF3 145 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 DEFB128Q7Z7B8 93 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 CPNE9Q8IYJ1 553 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 MIER2Q8N344 545 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 TOP1MTQ969P6 601 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 PLEKHG4BQ96PX9 1271 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 ADGRE3Q9BY15 652 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 TRIM8Q9BZR9 551 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 YIPF1Q9Y548 306 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 MICAL3Q7RTP6 2002 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 K7ERQ8 282 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 AP1G1O43747 822 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 TBL1XO60907 577 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 MYCP01106 439 aaPredicted RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 SMIM18P0DKX4 95 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 TTPAP49638 278 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 APLP1P51693 650 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 LIN52Q52LA3 116 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 KIAA1841Q6NSI8 718 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 CARNMT1Q8N4J0 409 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 NKAPQ8N5F7 415 aaKnown RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 DCBLD1Q8N8Z6 715 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 ADAMTS19Q8TE59 1207 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 ZNF483Q8TF39 744 aaPredicted RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 BHMTQ93088 406 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 ROPN1LQ96C74 230 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 LINGO1Q96FE5 620 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 ACOX2Q99424 681 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 FEM1AQ9BSK4 669 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 C1QTNF3Q9BXJ4 246 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 FAM192AQ9GZU8 254 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 MRPL40Q9NQ50 206 aaKnown RBP15.32■□□□□ 0.04
UPF3B-202ENST00000345865 RAB26Q9ULW5 256 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 PCDHB9Q9Y5E1 797 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 OR51B4Q9Y5P0 310 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 GPR45Q9Y5Y3 372 aa15.32■□□□□ 0.04
UPF3B-202ENST00000345865 C7orf72A4D263 438 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 FZD6O60353 706 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 GREM1O60565 184 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 VPS26AO75436 327 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 PYGLP06737 847 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 PRR35P0CG20 571 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 ATP6V1B2P21281 511 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 CES1P23141 567 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 ZFP36L2P47974 494 aaKnown RBP15.31■□□□□ 0.04
UPF3B-202ENST00000345865 TWF1Q12792 350 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 CAPRIN1Q14444 709 aaKnown RBP15.31■□□□□ 0.04
UPF3B-202ENST00000345865 HMBOX1Q6NT76 420 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 HERC6Q8IVU3 1022 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 ST13P4Q8IZP2 240 aaPredicted RBP15.31■□□□□ 0.04
UPF3B-202ENST00000345865 SARS2Q9NP81 518 aaKnown RBP15.31■□□□□ 0.04
UPF3B-202ENST00000345865 IL17CQ9P0M4 197 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 TRMT6Q9UJA5 497 aaKnown RBP15.31■□□□□ 0.04
UPF3B-202ENST00000345865 COL4A6Q14031 1691 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 SYCE1LA8MT33 242 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 H0Y626 953 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 H7C0S8 307 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 STX16O14662 325 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 MATN4O95460 622 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 FESP07332 822 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 ALPIP09923 528 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 CTPS1P17812 591 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 NRF1Q16656 503 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 AMIGO2Q86SJ2 522 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 SLC15A3Q8IY34 581 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 PCYOX1LQ8NBM8 494 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 CATSPER1Q8NEC5 780 aa15.31■□□□□ 0.04
UPF3B-202ENST00000345865 OR6K2Q8NGY2 324 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms