RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 PSMA4P25789 261 aaKnown RBP9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 FMO3P31513 532 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CDKN2BP42772 138 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CD47Q08722 323 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 DSG2Q14126 1118 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 MFSD10Q14728 455 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 TFDP3Q5H9I0 405 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 INTS5Q6P9B9 1019 aaKnown RBP9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 THAP5Q7Z6K1 395 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 C11orf96Q7Z7L8 435 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 TMC8Q8IU68 726 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CLEC4FQ8N1N0 589 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 RORBQ92753 470 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 GJD4Q96KN9 370 aaPredicted RBP9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CEP19Q96LK0 163 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 MCEEQ96PE7 176 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 SDHCQ99643 169 aaPredicted RBP9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 ILKAPQ9H0C8 392 aaPredicted RBP9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CDCP1Q9H5V8 836 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CATSPERBQ9H7T0 1116 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 DTLQ9NZJ0 730 aa9.61□□□□□ -0.87
PTCHD4-201ENST00000339488 CICQ96RK0 1608 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 EFCAB9A8MZ26 197 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L15C9J2P7 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L13C9JLJ4 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L11C9JVI0 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L18D6R9N7 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L22D6RA61 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L17D6RBQ6 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L19D6RCP7 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L20D6RJB6 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 MRASO14807 208 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 SIGLEC5O15389 551 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 CHMP2AO43633 222 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 TADA2AO75478 443 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 SPATA31C1P0DKV0 1188 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 MYCLP12524 364 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 UNGP13051 313 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 YBX3P16989 372 aaKnown RBP eCLIP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 IL10P22301 178 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 CHRNA5P30532 468 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 SLC15A1P46059 708 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 GTF2A2P52657 109 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 EIF6P56537 245 aaKnown RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 SIGLEC14Q08ET2 396 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L24Q0WX57 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 MRPL28Q13084 256 aaKnown RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 PLD1Q13393 1074 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 AOC3Q16853 763 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 BMT2Q1RMZ1 405 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 FUT11Q495W5 492 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 MTERF2Q49AM1 385 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 SETMARQ53H47 684 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 C6orf141Q5SZD1 244 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 TRAPPC3LQ5T215 181 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 ARHGEF16Q5VV41 709 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 BSPRYQ5W0U4 402 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 NAPEPLDQ6IQ20 393 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 LRRTM3Q86VH5 581 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 RIOX2Q8IUF8 465 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 CLEC10AQ8IUN9 316 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 DNAJC10Q8IXB1 793 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 RCOR2Q8IZ40 523 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 ZMIZ2Q8NF64 920 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 CERS2Q96G23 380 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 LINC00052Q96N35 136 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 MXRA8Q9BRK3 442 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 PPIL3Q9H2H8 161 aaKnown RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 ZCCHC4Q9H5U6 513 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 ZNF385DQ9H6B1 395 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 MKNK2Q9HBH9 465 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 LRRC4Q9HBW1 653 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 NPAP1Q9NZP6 1156 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 TINAGQ9UJW2 476 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 CDYLQ9Y232 598 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 COL1A1P02452 1464 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 LOC100506127A0A0U1RQW1 187 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 C2orf81A6NN90 581 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 USP17L5A8MUK1 530 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 NME4O00746 187 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 SRP72O76094 671 aaKnown RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 EPOP01588 193 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 FGRP09769 529 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 RPS3P23396 243 aaKnown RBP eCLIP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 GLRBP48167 497 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 CTSWP56202 376 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 GRB7Q14451 532 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 STARD3Q14849 445 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 ARL13AQ5H913 290 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 FAM171BQ6P995 826 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 RPS27LQ71UM5 84 aaKnown RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 STK32CQ86UX6 486 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 P3H2Q8IVL5 708 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 C8orf59Q8N0T1 100 aaPredicted RBP9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 WDR48Q8TAF3 677 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 PMM1Q92871 262 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 ACOX2Q99424 681 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 LXNQ9BS40 222 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 COPS4Q9BT78 406 aa9.6□□□□□ -0.87
PTCHD4-201ENST00000339488 PPA2Q9H2U2 334 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms