RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C6orf15Q6UXA7 325 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 CLEC17AQ6ZS10 378 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 CCDC13Q8IYE1 715 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 PSMG3-AS1Q96PY0 264 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 AGAP2Q99490 1192 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 CARD9Q9H257 536 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 FAM83DQ9H4H8 585 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 HAUS4Q9H6D7 363 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 PCDH18Q9HCL0 1135 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 SIDT1Q9NXL6 827 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 PKD2L2Q9NZM6 624 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 AIPL1Q9NZN9 384 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 KLHL3Q9UH77 587 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 KCNK6Q9Y257 313 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 PLAAQ9Y263 795 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 TP53TG5Q9Y2B4 290 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 CENPEQ02224 2701 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 NBPF19A0A087WUL8 3843 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 A0A0U1RQS6 177 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 LRRC53A6NM62 1247 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 MATN3O15232 486 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 GRID2O43424 1007 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 CLDN7O95471 211 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 C9P02748 559 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 ACP5P13686 325 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 DLSTP36957 453 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 GARSP41250 739 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 SPINT3P49223 89 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 FOXM1Q08050 763 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 KLHL30Q0D2K2 578 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 KRT81Q14533 505 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 ANKRD20A8PQ5CZ79 823 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 CCDC122Q5T0U0 273 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 ZNF571Q7Z3V5 609 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 AOPEPQ8N6M6 819 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 NIPA2Q8N8Q9 360 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 SEC14L1Q92503 715 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 MAML1Q92585 1016 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 STAMBPL1Q96FJ0 436 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 C9orf72Q96LT7 481 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 TDRD1Q9BXT4 1180 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 LRRC4CQ9HCJ2 640 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 PRDM8Q9NQV8 689 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 MYO1AQ9UBC5 1043 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 CNOT6Q9ULM6 557 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 CHKBQ9Y259 395 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 PRKAB1Q9Y478 270 aa14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 OAS3Q9Y6K5 1087 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-201ENST00000301897 C1orf232A0A0U1RR37 186 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 NUAK1O60285 661 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 RFPL1O75677 317 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 MT-ND3P03897 115 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 CCNYL3P0C7X3 344 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 XRCC1P18887 633 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 CCNCP24863 283 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 UBE2IP63279 158 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 GALNT2Q10471 571 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 IFI16Q16666 785 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 TRIM48Q8IWZ4 208 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 TSGA13Q96PP4 275 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 TBC1D10AQ9BXI6 508 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 ADGRE3Q9BY15 652 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 ISCUQ9H1K1 167 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 HSD3B7Q9H2F3 369 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 PCDH9Q9HC56 1237 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 RBM22Q9NW64 420 aaKnown RBP eCLIP14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 CROTQ9UKG9 612 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 TTLL3Q9Y4R7 772 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 PCDHGA6Q9Y5G7 932 aa14.59□□□□□ -0.07
CCDC88B-201ENST00000301897 CREBBPQ92793 2442 aa14.58□□□□□ -0.07
CCDC88B-201ENST00000301897 DDX3XO00571 662 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 MTA2O94776 668 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 UBXN7O94888 489 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 PRLP01236 227 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 VIPP01282 170 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 AMD1P17707 334 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 PMS2P54278 862 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 DSC2Q02487 901 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 HADHQ16836 314 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 C4orf17Q53FE4 359 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF569Q5MCW4 686 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 ATP1A1-AS1Q5TC04 95 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 PDPK2PQ6A1A2 396 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 TMEM26Q6ZUK4 368 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 ASB18Q6ZVZ8 466 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 RASGRP3Q8IV61 690 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 RBM12BQ8IXT5 1001 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 LPCAT1Q8NF37 534 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 WDR24Q96S15 920 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 ZSCAN5AQ9BUG6 496 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 MLPHQ9BV36 600 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 OSGEPL1Q9H4B0 414 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF768Q9H5H4 540 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 RAD18Q9NS91 495 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 IP6K2Q9UHH9 426 aa14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 MRPS18BQ9Y676 258 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF106Q9H2Y7 1883 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-201ENST00000301897 SPENQ96T58 3664 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 BLACEA4D250 179 aa14.57□□□□□ -0.08
CCDC88B-201ENST00000301897 GOLGA6L3A6NEY3 463 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms