RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 RAD1O60671 282 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 PPFIA2O75334 1257 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 MTA2O94776 668 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 MMP2P08253 660 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 SFTPCP11686 197 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 LIFP15018 202 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 KDELR1P24390 212 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 MAN1A1P33908 653 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 TSPAN7P41732 249 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 KCNC4Q03721 635 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 PPIDQ08752 370 aaKnown RBP12.63□□□□□ -0.39
CD44-203ENST00000278386 SLC10A2Q12908 348 aaPredicted RBP12.63□□□□□ -0.39
CD44-203ENST00000278386 SQSTM1Q13501 440 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 PCSK7Q16549 785 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 SLC18A3Q16572 532 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 INSCQ1MX18 579 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 ODF2Q5BJF6 829 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 KDELC2Q7Z4H8 507 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 RAPGEF5Q92565 580 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 SH3KBP1Q96B97 665 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 RNF157Q96PX1 679 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 WDR24Q96S15 920 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 RMI1Q9H9A7 625 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 ZFYVE1Q9HBF4 777 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 CNOT6Q9ULM6 557 aaKnown RBP12.63□□□□□ -0.39
CD44-203ENST00000278386 NENFQ9UMX5 172 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.63□□□□□ -0.39
CD44-203ENST00000278386 MYO18BQ8IUG5 2567 aa12.63□□□□□ -0.39
CD44-203ENST00000278386 ZNF891A8MT65 544 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 APOL1O14791 398 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 PPP1R12AO14974 1030 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 GRID2O43424 1007 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 WISP1O95388 367 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 KRT1P04264 644 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 PIRTP0C851 137 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 F3P13726 295 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 NOP2P46087 812 aaKnown RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 EPHA4P54764 986 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 IFI35P80217 286 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 FAM182AQ5T1J6 154 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 ZNF648Q5T619 568 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 WDR74Q6RFH5 385 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 CRTC3Q6UUV7 619 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 CEACAM20Q6UY09 585 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 RFX6Q8HWS3 928 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 TRIM48Q8IWZ4 208 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 PLD5Q8N7P1 536 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 AVL9Q8NBF6 648 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 KIAA1143Q96AT1 154 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 TEFMQ96QE5 360 aaKnown RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 CTRCQ99895 268 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 ANP32EQ9BTT0 268 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 ZSCAN5AQ9BUG6 496 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 TBC1D10AQ9BXI6 508 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 MAK16Q9BXY0 300 aaKnown RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 XPO4Q9C0E2 1151 aaKnown RBP12.62□□□□□ -0.39
CD44-203ENST00000278386 OR2AG1Q9H205 316 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 CARD9Q9H257 536 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 STARD5Q9NSY2 213 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 ATXN10Q9UBB4 475 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 SHOC2Q9UQ13 582 aa12.62□□□□□ -0.39
CD44-203ENST00000278386 KIR2DS5A0A0G2JLQ3 304 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 A0A0G2JNG1 304 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 RGSL1A5PLK6 1076 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 KIR2DS3K7RE56 304 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 AKR1B10O60218 316 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 NUAK1O60285 661 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 SLC25A14O95258 325 aaPredicted RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 TMEM253P0C7T8 217 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 TNNT1P13805 278 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 ZNF8P17098 575 aaPredicted RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 DYNLT1P63172 113 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 KIR2DS5Q14953 304 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 CLCA4Q14CN2 919 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 SEPT7Q16181 437 aaKnown RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 BORAQ6PGQ7 559 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 IYDQ6PHW0 289 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 NPNTQ6UXI9 565 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 ATG14Q6ZNE5 492 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 NT5DC3Q86UY8 548 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 NLGN4XQ8N0W4 816 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 NLGN4YQ8NFZ3 816 aaPredicted RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 RTP4Q96DX8 246 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 AGAP3Q96P47 875 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 SLC12A9Q9BXP2 914 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 GPR63Q9BZJ6 419 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 BRD8Q9H0E9 1235 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 GPN2Q9H9Y4 310 aaPredicted RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 PRDM8Q9NQV8 689 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 KLC4Q9NSK0 619 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 ZNHIT6Q9NWK9 470 aaKnown RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 CPNE7Q9UBL6 633 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 ZNF711Q9Y462 761 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 FLNBO75369 2602 aaKnown RBP12.61□□□□□ -0.39
CD44-203ENST00000278386 SPTA1P02549 2419 aa12.61□□□□□ -0.39
CD44-203ENST00000278386 A6NCN8 305 aa12.6□□□□□ -0.39
CD44-203ENST00000278386 LILRA5A6NI73 299 aa12.6□□□□□ -0.39
CD44-203ENST00000278386 OR5K4A6NMS3 321 aa12.6□□□□□ -0.39
CD44-203ENST00000278386 PDZK1P1A8MUH7 402 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms