RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 SLC7A5Q01650 507 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 MORF4L2Q15014 288 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 TRADDQ15628 312 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 SKIDA1Q1XH10 827 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 MSS51Q4VC12 460 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 DUPD1Q68J44 220 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 PCGF5Q86SE9 256 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 ADGRG6Q86SQ4 1221 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 HOOK3Q86VS8 718 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 MMGT1Q8N4V1 131 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 MNS1Q8NEH6 495 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 HDAC10Q969S8 669 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CCDC97Q96F63 343 aaPredicted RBP12.64□□□□□ -0.39
SS18-202ENST00000269138 SIGLEC10Q96LC7 697 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CAMK1GQ96NX5 476 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 VPS35Q96QK1 796 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 LRRC61Q9BV99 259 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 KIFC1Q9BW19 673 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CARD6Q9BX69 1037 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CLPBQ9H078 707 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 OR2AG1Q9H205 316 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 ASB8Q9H765 288 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CARS2Q9HA77 564 aaKnown RBP12.64□□□□□ -0.39
SS18-202ENST00000269138 ATXN10Q9UBB4 475 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 APOBEC3BQ9UH17 382 aaKnown RBP12.64□□□□□ -0.39
SS18-202ENST00000269138 ANAPC5Q9UJX4 755 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 APPL1Q9UKG1 709 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 SUFUQ9UMX1 484 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 PRKAB1Q9Y478 270 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 PLEKHM1Q9Y4G2 1056 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CABIN1Q9Y6J0 2220 aa12.64□□□□□ -0.39
SS18-202ENST00000269138 CTAGE15A4D2H0 777 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 SDR42E2A6NKP2 422 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 H7C0S8 307 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 SH3BP5O60239 455 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 PCDHGA12O60330 932 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 TNFP01375 233 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 CTAGE8P0CG41 777 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 ZNF8P17098 575 aaPredicted RBP12.63□□□□□ -0.39
SS18-202ENST00000269138 GNPDA1P46926 289 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 HNRNPKP61978 463 aaKnown RBP eCLIP12.63□□□□□ -0.39
SS18-202ENST00000269138 ACVR1Q04771 509 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 NFATC2Q13469 925 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 LAMB3Q13751 1172 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 PRRT3Q5FWE3 981 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 ZRANB3Q5FWF4 1079 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 GPRC6AQ5T6X5 926 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 DBX2Q6ZNG2 339 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 NLRP9Q7RTR0 991 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 CTAGE6Q86UF2 777 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 PHYKPLQ8IUZ5 450 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 CTAGE4Q8IX94 777 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 PIANPQ8IYJ0 282 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 ZNF548Q8NEK5 533 aaPredicted RBP12.63□□□□□ -0.39
SS18-202ENST00000269138 CCL4L1Q8NHW4 92 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 GDAP1Q8TB36 358 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 LMX1AQ8TE12 382 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 NAT14Q8WUY8 206 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 MFSD3Q96ES6 412 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 SCARF2Q96GP6 870 aaPredicted RBP12.63□□□□□ -0.39
SS18-202ENST00000269138 C19orf43Q9BQ61 176 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 SLC13A1Q9BZW2 595 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 TMEM168Q9H0V1 697 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 TRIM39Q9HCM9 518 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 TREX1Q9NSU2 369 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 GRHL1Q9NZI5 618 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 RIMKLBQ9ULI2 386 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 SOX13Q9UN79 622 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 PCDHGB2Q9Y5G2 931 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 DGKBQ9Y6T7 804 aa12.63□□□□□ -0.39
SS18-202ENST00000269138 H3BM21 787 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SLC30A4O14863 429 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 TM4SF5O14894 197 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 YKT6O15498 198 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 FFAR2O15552 330 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 AQP9O43315 295 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 DNAJC6O75061 913 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 GOT2P00505 430 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 IVLP07476 585 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 GIMD1P0DJR0 217 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 ITGALP20701 1170 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 DHX9Q08211 1270 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 SLC14A1Q13336 389 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 ITGA9Q13797 1035 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SMAD1Q15797 465 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 PSAPL1Q6NUJ1 521 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 C8orf74Q6P047 294 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CASC4Q6P4E1 433 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 TAS2R42Q7RTR8 314 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SNX20Q7Z614 316 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 IGDCC3Q8IVU1 814 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 LRRN4CLQ8ND94 238 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 OR6P1Q8NGX9 317 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SETD7Q8WTS6 366 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 FCRL3Q96P31 734 aaPredicted RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 MRM3Q9HC36 420 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 SMOXQ9NWM0 555 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SPASTQ9UBP0 616 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 ZNHIT2Q9UHR6 403 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CDV3Q9UKY7 258 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms