RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 GPR153Q6NV75 609 aa14□□□□□ -0.17
SS18-201ENST00000269137 Q6ZVL8 140 aa14□□□□□ -0.17
SS18-201ENST00000269137 PIM3Q86V86 326 aa14□□□□□ -0.17
SS18-201ENST00000269137 FSTL5Q8N475 847 aaPredicted RBP14□□□□□ -0.17
SS18-201ENST00000269137 ANKRD49Q8WVL7 239 aa14□□□□□ -0.17
SS18-201ENST00000269137 HLA-CQ95604 372 aa14□□□□□ -0.17
SS18-201ENST00000269137 RAB7BQ96AH8 199 aa14□□□□□ -0.17
SS18-201ENST00000269137 MRPL46Q9H2W6 279 aaKnown RBP14□□□□□ -0.17
SS18-201ENST00000269137 SYTL2Q9HCH5 934 aa14□□□□□ -0.17
SS18-201ENST00000269137 SLCO1B3Q9NPD5 702 aa14□□□□□ -0.17
SS18-201ENST00000269137 SMOXQ9NWM0 555 aa14□□□□□ -0.17
SS18-201ENST00000269137 EYSQ5T1H1 3165 aa14□□□□□ -0.17
SS18-201ENST00000269137 GOLGA8CPA6NN73 597 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 H3BMM5 538 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 VPS26AO75436 327 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 SBK3P0C264 359 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ELFN1P0C7U0 828 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ZNF37AP17032 561 aaPredicted RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 NTSR1P30989 418 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 CREB5Q02930 508 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 PDAP1Q13442 181 aaKnown RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 CSHL1Q14406 222 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ACAP2Q15057 778 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 CHI3L2Q15782 390 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ATP13A5Q4VNC0 1218 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 GKAP1Q5VSY0 366 aaPredicted RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 KLC3Q6P597 504 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 CYP2U1Q7Z449 544 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 GABRG3Q99928 467 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 CLPBQ9H078 707 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 HEBP1Q9NRV9 189 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ZDHHC3Q9NYG2 299 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ATG2BQ96BY7 2078 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 PLXNB3Q9ULL4 1909 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 IGLV3-16A0A075B6K0 115 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 SNX3O60493 162 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 SYNCRIPO60506 623 aaKnown RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 RNASEH1O60930 286 aaKnown RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 ADH1BP00325 375 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 EGFP01133 1207 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 RBP1P09455 135 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 FGF3P11487 239 aaPredicted RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 KCNA4P22459 653 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 TIE1P35590 1138 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ETV3P41162 512 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 WASP42768 502 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 GLRBP48167 497 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 PSMD8P48556 350 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 LIG3P49916 1009 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 PFKPQ01813 784 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 SATB1Q01826 763 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 GRSF1Q12849 480 aaKnown RBP eCLIP13.99□□□□□ -0.17
SS18-201ENST00000269137 PON2Q15165 354 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 LEXMQ3ZCV2 418 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 TMEM52BQ4KMG9 183 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 HENMT1Q5T8I9 393 aaKnown RBP13.99□□□□□ -0.17
SS18-201ENST00000269137 FOXR1Q6PIV2 292 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ZYG11AQ6WRX3 759 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 MACC1Q6ZN28 852 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 FAM47EQ6ZV65 393 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 C10orf107Q8IVU9 208 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 SPATA6LQ8N4H0 392 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 TRAM1L1Q8N609 369 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 OR6Y1Q8NGX8 325 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 MSANTD3Q96H12 275 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 SCYL1Q96KG9 808 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 COQ10AQ96MF6 247 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 GPR21Q99679 349 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 ZSCAN5AQ9BUG6 496 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 TSSK1BQ9BXA7 367 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 FBRSQ9HAH7 460 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 GNPTGQ9UJJ9 305 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 FAM50BQ9Y247 325 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 PLXNA2O75051 1894 aa13.99□□□□□ -0.17
SS18-201ENST00000269137 PIKFYVEQ9Y2I7 2098 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 TK2O00142 265 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 NIPSNAP2O75323 286 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 SNNO75324 88 aaPredicted RBP13.98□□□□□ -0.17
SS18-201ENST00000269137 SERPINE1P05121 402 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 MYL2P10916 166 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 GM2AP17900 193 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 GRK2P25098 689 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 P2RY2P41231 377 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 NSG1P42857 185 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 PRKAA2P54646 552 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 SEC13P55735 322 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 BST1Q10588 318 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 CST6Q15828 149 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 TECRLQ5HYJ1 363 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 PRPF38BQ5VTL8 546 aaKnown RBP13.98□□□□□ -0.17
SS18-201ENST00000269137 SDE2Q6IQ49 451 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 UGT3A1Q6NUS8 523 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 PAQR3Q6TCH7 311 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 OTOAQ7RTW8 1153 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 TRMT11Q7Z4G4 463 aaKnown RBP13.98□□□□□ -0.17
SS18-201ENST00000269137 SREK1Q8WXA9 508 aaKnown RBP13.98□□□□□ -0.17
SS18-201ENST00000269137 SCAMP4Q969E2 229 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 COPS8Q99627 209 aa13.98□□□□□ -0.17
SS18-201ENST00000269137 ELAC2Q9BQ52 826 aaKnown RBP13.98□□□□□ -0.17
SS18-201ENST00000269137 BOCQ9BWV1 1114 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms