RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TELO2Q9Y4R8 837 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 PECAM1P16284 738 aaPredicted RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 S100A10P60903 97 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 OLR1P78380 273 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SLC8B1Q6J4K2 584 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF410Q86VK4 478 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ECHDC2Q86YB7 292 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 RASGRP3Q8IV61 690 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 PNLDC1Q8NA58 520 aaKnown RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 EMID1Q96A84 441 aaPredicted RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 VAT1Q99536 393 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 CRB1P82279 1406 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 PTPRJQ12913 1337 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SPDYCQ5MJ68 293 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 UBE2J2Q8N2K1 259 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 LIX1Q8N485 282 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 TBCBQ99426 244 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 MANSC4A6NHS7 340 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 H3BM21 787 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TUBG1P23258 451 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 WASP42768 502 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ERVK-24P63145 666 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 RANBP3LQ86VV4 465 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 BEND7Q8N7W2 519 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PNO1Q9NRX1 252 aaKnown RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PDP1Q9P0J1 537 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 STOX2Q9P2F5 926 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TRPS1Q9UHF7 1281 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ITGB1BP2Q9UKP3 347 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PCDHB11Q9Y5F2 797 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PDCD5O14737 125 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 INMTO95050 263 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PGM5Q15124 567 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CAPN13Q6MZZ7 669 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TXNDC11Q6PKC3 985 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF720Q7Z2F6 126 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ETNPPLQ8TBG4 499 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 STK32AQ8WU08 396 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TBC1D17Q9HA65 648 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 USP20Q9Y2K6 914 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 UBXN7O94888 489 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ALADP13716 330 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TAL1P17542 331 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CLCN5P51795 746 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF792Q3KQV3 632 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 MTX3Q5HYI7 312 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM192Q8IY95 271 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CARNS1A5YM72 827 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ITGB1P05556 798 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 LPOP22079 712 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 SCNN1GP51170 649 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 MXD1Q05195 221 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 DPYSQ14117 519 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 UNC5AQ6ZN44 842 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TNS4Q8IZW8 715 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 RBM18Q96H35 190 aaKnown RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 MAU2Q9Y6X3 613 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TET3O43151 1660 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 SLC30A4O14863 429 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CCNKO75909 580 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 NADKO95544 446 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 HNRNPLP14866 589 aaKnown RBP eCLIP11.32□□□□□ -0.62e-7■■■□□ 15.2
PTPN4-201ENST00000263708 HOXB8P17481 243 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 NAGLUP54802 743 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 GCNT6Q5T4J0 391 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 METTL3Q86U44 580 aaKnown RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 RAB43Q86YS6 212 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PLCZ1Q86YW0 608 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 GALNT13Q8IUC8 556 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 C10orf107Q8IVU9 208 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 KATNAL2Q8IYT4 538 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 RBFAQ8N0V3 343 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 LINC00116Q8NCU8 138 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 OR6K6Q8NGW6 343 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ERMAPQ96PL5 475 aaPredicted RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ANKZF1Q9H8Y5 726 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 UCKL1Q9NWZ5 548 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ERVK-18Q9QC07 812 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 EIF3KQ9UBQ5 218 aaKnown RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 IL33O95760 270 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 GSTT2BP0CG30 244 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CD247P20963 164 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 HSPB3Q12988 150 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 TREML1Q86YW5 311 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 SFRP1Q8N474 314 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 OR2L2Q8NH16 312 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 COQ8AQ8NI60 647 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PLEKHA6Q9Y2H5 1048 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 DDX3YO15523 660 aaKnown RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 SLC22A3O75751 556 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CXCL14O95715 111 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 UROSP10746 265 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 NELFEP18615 380 aaKnown RBP11.32□□□□□ -0.6
PTPN4-201ENST00000263708 RYKP34925 604 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 AVPR1BP47901 424 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 CFAP52Q8N1V2 620 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 DPEP2Q9H4A9 486 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 BRF2Q9HAW0 419 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 GDAP2Q9NXN4 497 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 NR2E1Q9Y466 385 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms