RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ICAM3P32942 547 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 MTX3Q5HYI7 312 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 KLHL24Q6TFL4 600 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ZYG11AQ6WRX3 759 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 PARGQ86W56 976 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TRPM4Q8TD43 1214 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 HNRNPABQ99729 332 aaKnown RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ACBD6Q9BR61 282 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 FGFBP2Q9BYJ0 223 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 BCL2L14Q9BZR8 327 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 MAGEH1Q9H213 219 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ABCG8Q9H221 673 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ARHGEF4Q9NR80 690 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 SUCOQ9UBS9 1254 aaKnown RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 HMGXB4Q9UGU5 601 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ING4Q9UNL4 249 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TCAF1Q9Y4C2 921 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 PCDHA2Q9Y5H9 948 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 MCIDASD6RGH6 385 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 PLK4O00444 970 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 KRT33AO76009 404 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ASLP04424 464 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 FLT3LGP49771 235 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 PIK3C3Q8NEB9 887 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 PDZD7Q9H5P4 517 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 MYBPC1Q00872 1141 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ATP13A5Q4VNC0 1218 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ARL13AQ5H913 290 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 GPR158Q5T848 1215 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TMPRSS11BQ86T26 416 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TDRPQ86YL5 185 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 LRRC57Q8N9N7 239 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 RAD51AP1Q96B01 352 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 GPR21Q99679 349 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 RBM4BQ9BQ04 359 aaKnown RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 RBM4Q9BWF3 364 aaKnown RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 MIR1-1HGQ9H1L0 117 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 GULP1Q9UBP9 304 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 LGALS13Q9UHV8 139 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3DA0A087WVF3 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3IA0A087WXS9 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3EA0A087X179 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3KA0A087X1G2 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 A0A1B0GVM2 712 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3FA6NER0 549 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TCAF2A6NFQ2 919 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3LB9A6J9 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 LIN7AO14910 233 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 MATN3O15232 486 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 SIN3BO75182 1162 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3HP0C7X1 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 BCAP31P51572 246 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 QPCTQ16769 361 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 FNBP1LQ5T0N5 605 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 CCNYL2Q5T2Q4 361 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ZNF697Q5TEC3 545 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3GQ6DHY5 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3CQ6IPX1 549 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 RTL4Q6ZR62 310 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 OAFQ86UD1 273 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 TBC1D3Q8IZP1 549 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 IKZF4Q9H2S9 585 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 IPPKQ9H8X2 491 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ELL3Q9HB65 397 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 IFT80Q9P2H3 777 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ADGRB2O60241 1585 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ELOVL7A1L3X0 281 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 OR5F1O95221 314 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 IDSP22304 550 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 PRDX6P30041 224 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 JAM2P57087 298 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 BNIP1Q12981 228 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 SLC34A3Q8N130 599 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 FLCNQ8NFG4 579 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 MCFD2Q8NI22 146 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 UPF1Q92900 1129 aaKnown RBP eCLIP13.48□□□□□ -0.251e-6■■■■■ 31.8
SF3A1-201ENST00000215793 TBATAQ96M53 351 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 PDCD10Q9BUL8 212 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 NECTIN3Q9NQS3 549 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 PHF11Q9UIL8 331 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 CDH22Q9UJ99 828 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 PADI3Q9ULW8 664 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 TLL1O43897 1013 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 ALOX5P09917 674 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 GPD2P43304 727 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 NRG1Q02297 640 aaPredicted RBP13.48□□□□□ -0.25
SF3A1-201ENST00000215793 GNA12Q03113 381 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 DMPKQ09013 629 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 HNRNPDQ14103 355 aaKnown RBP13.48□□□□□ -0.25
SF3A1-201ENST00000215793 LACTB2Q53H82 288 aaPredicted RBP13.48□□□□□ -0.25
SF3A1-201ENST00000215793 HPS6Q86YV9 775 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 GPR135Q8IZ08 494 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 HIPK3Q9H422 1215 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 PPIEQ9UNP9 301 aaKnown RBP13.48□□□□□ -0.25
SF3A1-201ENST00000215793 STXBP5LQ9Y2K9 1186 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 MAFBQ9Y5Q3 323 aaPredicted RBP13.48□□□□□ -0.25
SF3A1-201ENST00000215793 PRNPP04156 253 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 CYP4B1P13584 511 aa13.48□□□□□ -0.25
SF3A1-201ENST00000215793 SELPP16109 830 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms