RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 MRPL40Q9NQ50 206 aaKnown RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 PHPT1Q9NRX4 125 aaPredicted RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 DNAJC28Q9NX36 388 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 GRHL1Q9NZI5 618 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 KLF15Q9UIH9 416 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ANAPC5Q9UJX4 755 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 TMEM98Q9Y2Y6 226 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 UTP11Q9Y3A2 253 aaKnown RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 OAS3Q9Y6K5 1087 aaKnown RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 VPS13AQ96RL7 3174 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 ESYT3A0FGR9 886 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 SDC3O75056 442 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 MTX2O75431 263 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 SRP72O76094 671 aaKnown RBP13.1□□□□□ -0.31
GTF3A-209ENST00000640289 CER1O95813 267 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 FUCA1P04066 466 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 HOXC4P09017 264 aaPredicted RBP13.1□□□□□ -0.31
GTF3A-209ENST00000640289 PRSS56P0CW18 603 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 HTR1BP28222 390 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 MC4RP32245 332 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 HADHAP40939 763 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 DHX9Q08211 1270 aaKnown RBP13.1□□□□□ -0.31
GTF3A-209ENST00000640289 BNIP3Q12983 259 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 SHBQ15464 509 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 SKIDA1Q1XH10 827 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 ALG11Q2TAA5 492 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 MSS51Q4VC12 460 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 IL27RAQ6UWB1 636 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 RD3Q7Z3Z2 195 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 RBFAQ8N0V3 343 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 OR56A4Q8NGH8 313 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 ZNF398Q8TD17 642 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 OR1E3Q8WZA6 343 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 GLYATL1Q969I3 302 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 TSACCQ96A04 125 aaPredicted RBP13.1□□□□□ -0.31
GTF3A-209ENST00000640289 MFSD3Q96ES6 412 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 PDXPQ96GD0 296 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 CDKN2AIPNLQ96HQ2 116 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 SIGLEC10Q96LC7 697 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 KIFC1Q9BW19 673 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 FRMD8Q9BZ67 464 aaPredicted RBP13.1□□□□□ -0.31
GTF3A-209ENST00000640289 RAB17Q9H0T7 212 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 ASB8Q9H765 288 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 FGF22Q9HCT0 170 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 KLQ9UEF7 1012 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 DMGDHQ9UI17 866 aaKnown RBP13.1□□□□□ -0.31
GTF3A-209ENST00000640289 MOSPD1Q9UJG1 213 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 APPL1Q9UKG1 709 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 SOX13Q9UN79 622 aa13.1□□□□□ -0.31
GTF3A-209ENST00000640289 MYLKQ15746 1914 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 GON4LQ3T8J9 2241 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 A0A1B0GTQ1 180 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CCDC162PA2VCL2 907 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SDR42E2A6NKP2 422 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 C4orf47A7E2U8 309 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 H7C0S8 307 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SMAPO00193 183 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SLC25A14O95258 325 aaPredicted RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 ASMTLO95671 621 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CSF2P04141 144 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CEACAM5P06731 702 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 PSMA3P25788 255 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CDKN1CP49918 316 aaPredicted RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SRP54P61011 504 aaKnown RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 GUCY2DQ02846 1103 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 ACVR1Q04771 509 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CALCOCO2Q13137 446 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 LAMB3Q13751 1172 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 ITGA9Q13797 1035 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 TCEA2Q15560 299 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SMAD1Q15797 465 aaKnown RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 BBS9Q3SYG4 887 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 KHDC1Q4VXA5 237 aaKnown RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 ZRANB3Q5FWF4 1079 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 HP1BP3Q5SSJ5 553 aaPredicted RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 PDPK2PQ6A1A2 396 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CASC4Q6P4E1 433 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 MARK2Q7KZI7 788 aaKnown RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 NLRP9Q7RTR0 991 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 HID1Q8IV36 788 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 PHACTR4Q8IZ21 702 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 GPR161Q8N6U8 529 aaKnown RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 PNPLA1Q8N8W4 532 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 BBOF1Q8ND07 529 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 DTX3LQ8TDB6 740 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 BTN2A2Q8WVV5 523 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 HDAC10Q969S8 669 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 CCDC97Q96F63 343 aaPredicted RBP13.09□□□□□ -0.31
GTF3A-209ENST00000640289 VPS35Q96QK1 796 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 C19orf43Q9BQ61 176 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 ERVMER34-1Q9H9K5 563 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 TMEM9BQ9NQ34 198 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 TREX1Q9NSU2 369 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 WHRNQ9P202 907 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 RIMKLBQ9ULI2 386 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SLC30A1Q9Y6M5 507 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 SCN8AQ9UQD0 1980 aa13.09□□□□□ -0.31
GTF3A-209ENST00000640289 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.08□□□□□ -0.32
GTF3A-209ENST00000640289 PRSS38A1L453 326 aa13.08□□□□□ -0.32
GTF3A-209ENST00000640289 BHMG1C9JSJ3 638 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms