RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PAIP2BQ9ULR5 123 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 NEUROG3Q9Y4Z2 214 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 IPPQ9Y573 584 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PIEZO1Q92508 2521 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 A0A1W2PQ45 241 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 A0A1W2PQY0 241 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TCRBV3S1A0A5B6 114 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TCAF2A6NFQ2 919 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 A8MT66 165 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SUPT3HB4E1H0 165 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 DYNC1LI2O43237 492 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SUPT3HO75486 399 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MLYCDO95822 493 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TFAP2AP05549 437 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 RPL17P18621 184 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 EEF1DP29692 281 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GRIK1P39086 918 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GRIA3P42263 894 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SEMA3BQ13214 749 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MYLK3Q32MK0 819 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SLC44A4Q53GD3 710 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TECRLQ5HYJ1 363 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 AARS2Q5JTZ9 985 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 HECTD2Q5U5R9 776 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SYPL2Q5VXT5 272 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TMEM198Q66K66 360 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ANKS6Q68DC2 871 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 FBXL19Q6PCT2 694 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CYP2R1Q6VVX0 501 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 LIMS2Q7Z4I7 341 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CHERPQ8IWX8 916 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TMEM151AQ8N4L1 468 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 EFHBQ8N7U6 833 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 FAM47BQ8NA70 645 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 VPS37AQ8NEZ2 397 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ADAM32Q8TC27 787 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TRIB2Q92519 343 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MS4A3Q96HJ5 214 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PPP1R10Q96QC0 940 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 IL12RB2Q99665 862 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 C1orf50Q9BV19 199 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ANKRD60Q9BZ19 345 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CXCL16Q9H2A7 254 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SEMA6AQ9H2E6 1030 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF385DQ9H6B1 395 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SARDHQ9UL12 918 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 FZD1Q9UP38 647 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GIT1Q9Y2X7 761 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 HES2Q9Y543 173 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PLXNB3Q9ULL4 1909 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 COL4A6Q14031 1691 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 VWA8A3KMH1 1905 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 A0A0J9YYE9 177 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 YJEFN3A6XGL0 299 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 E7ENX8 843 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 CLDN5O00501 218 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 RNASEH2AO75792 299 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 RHOBTB1O94844 696 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 NPPAP01160 153 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 FGF1P05230 155 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 HNRNPLP14866 589 aaKnown RBP eCLIP3.96□□□□□ -1.774e-7■■□□□ 13
SCN1A-214ENST00000637038 PCSK2P16519 638 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF12P17014 697 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 HLA-DPA1P20036 260 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 OGNP20774 298 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 TPP2P29144 1249 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 SERPINB10P48595 397 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 CLK1P49759 484 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 PSEN2P49810 448 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 NDST2P52849 883 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 EEFSECP57772 596 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 HERVK_113P63132 956 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 MYBPC1Q00872 1141 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 SULT2A1Q06520 285 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 GRIK2Q13002 908 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 PCSK7Q16549 785 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF792Q3KQV3 632 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 SMUG1Q53HV7 270 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 PM20D1Q6GTS8 502 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 ESRP1Q6NXG1 681 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 ALKAL1Q6UXT8 129 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 CHSY3Q70JA7 882 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 MTSS1LQ765P7 747 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 TAC4Q86UU9 113 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 KLHDC8BQ8IXV7 354 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 SFRP1Q8N474 314 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 FBXO39Q8N4B4 442 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 NKAPQ8N5F7 415 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 RTL3Q8N8U3 475 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 MFSD2AQ8NA29 543 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 TXNDC5Q8NBS9 432 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 RNF169Q8NCN4 708 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 ZFP28Q8NHY6 868 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 STAG3L4Q8TBR4 150 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 SPPL2BQ8TCT7 592 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 DQX1Q8TE96 717 aaKnown RBP3.96□□□□□ -1.77
SCN1A-214ENST00000637038 EDEM1Q92611 657 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 CLIP3Q96DZ5 547 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 PHF21BQ96EK2 531 aa3.96□□□□□ -1.77
SCN1A-214ENST00000637038 SH3GL1Q99961 368 aa3.96□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms