RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MYO6Q9UM54 1294 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 RPL26L1Q9UNX3 145 aaKnown RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 PCDHGB7Q9Y5F8 929 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 RPS6KL1Q9Y6S9 549 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 RELNP78509 3460 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 LOC101059948A0A1B0GTJ6 334 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 AGRPO00253 132 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 NKX2-8O15522 239 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 LRCH4O75427 683 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MTA2O94776 668 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 PGLSO95336 258 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MAP3K6O95382 1288 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MYBL1P10243 752 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 F3P13726 295 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 CHRNB2P17787 502 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 VCLP18206 1134 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 OAS2P29728 719 aaKnown RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 CSF2RBP32927 897 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 PCK1P35558 622 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 GARSP41250 739 aaKnown RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 RGRP47804 291 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 PMS2P54278 862 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 PDE1BQ01064 536 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 IGFBP7Q16270 282 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.24□□□□□ -1.41
CUX1-220ENST00000607092 PPP6R3Q5H9R7 873 aaPredicted RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 SNAP47Q5SQN1 464 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 NKAIN2Q5VXU1 208 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 DENND2CQ68D51 928 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 ACAD10Q6JQN1 1059 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 TIGD7Q6NT04 549 aaPredicted RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 C16orf46Q6P387 395 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 DOK6Q6PKX4 331 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 CLEC17AQ6ZS10 378 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 Q6ZVL8 140 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 ASB18Q6ZVZ8 466 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 TECPR1Q7Z6L1 1165 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 PHLDB2Q86SQ0 1253 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 APLFQ8IW19 511 aaPredicted RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 TRIM48Q8IWZ4 208 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MCOLN2Q8IZK6 566 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 ENOX1Q8TC92 643 aaKnown RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 SLC37A2Q8TED4 501 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 LRRN4Q8WUT4 740 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 THAP4Q8WY91 577 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 STAMBPL1Q96FJ0 436 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 ZDHHC12Q96GR4 267 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 SRPK1Q96SB4 655 aaKnown RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 AGPAT1Q99943 283 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MGME1Q9BQP7 344 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 GPR87Q9BY21 358 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 ULBP3Q9BZM4 244 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 XPO4Q9C0E2 1151 aaKnown RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 POLR1EQ9GZS1 481 aaKnown RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 CLSTN2Q9H4D0 955 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 SUDS3Q9H7L9 328 aaPredicted RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 PDE7BQ9NP56 450 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 NLRC4Q9NPP4 1024 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 OCIAD1Q9NX40 245 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 RCOR3Q9P2K3 495 aaPredicted RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 PCDHGC4Q9Y5F7 938 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 PCDHGA6Q9Y5G7 932 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 KCNMB2Q9Y691 235 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 LRRK1Q38SD2 2015 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MTORP42345 2549 aa6.24□□□□□ -1.41
CUX1-220ENST00000607092 MN1Q10571 1320 aaPredicted RBP6.24□□□□□ -1.41
CUX1-220ENST00000607092 A0A0J9YYE9 177 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TCRBV5S1A1TA0A578 114 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 BLACEA4D250 179 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 GOLGA6L3A6NEY3 463 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TTLL8A6PVC2 850 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 A8MU76 341 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 A8MX80 341 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CFAP99D6REC4 459 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 VEGFDO43915 354 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 KCNJ13O60928 360 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 GADD45BO75293 160 aaPredicted RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 DLGAP3O95886 979 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 VIPP01282 170 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TRBC1P01850 177 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 GZMAP12544 262 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 GM2AP17900 193 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TNFAIP3P21580 790 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 MPSTP25325 297 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CASP14P31944 242 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 DLSTP36957 453 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 MMP13P45452 471 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 ARSDP51689 593 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CLCNKAP51800 687 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 RPL7AP62424 266 aaKnown RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 RPS15P62841 145 aaKnown RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 FOXM1Q08050 763 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 SLC10A7Q0GE19 358 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 NFATC2Q13469 925 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 MAMLD1Q13495 774 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 KRT31Q15323 416 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 DPCR1Q3MIW9 517 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 RAB6CQ53S08 254 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 ANKRD20A8PQ5CZ79 823 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 ZFYVE27Q5T4F4 411 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms