RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 PSMA2P25787 234 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 SLC19A1P41440 591 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 UQCRFS1P47985 274 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 CLCNKAP51800 687 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 ZNF135P52742 658 aaPredicted RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 COPB1P53618 953 aaKnown RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 EPHA4P54764 986 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 UBE2IP63279 158 aaKnown RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 MC1RQ01726 317 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 NFATC2Q13469 925 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 BIRC2Q13490 618 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 LAMB3Q13751 1172 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 LRP8Q14114 963 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 BECN1Q14457 450 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 DPYSL2Q16555 572 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 PPP6R3Q5H9R7 873 aaPredicted RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 ARMC12Q5T9G4 340 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 LRRC66Q68CR7 880 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 ALG1LQ6GMV1 187 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 CAPRIN2Q6IMN6 1127 aaKnown RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 C16orf46Q6P387 395 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 TMEM135Q86UB9 458 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 APLFQ8IW19 511 aaPredicted RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 RAVER1Q8IY67 606 aaKnown RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 EXD1Q8NHP7 514 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 ARRDC2Q8TBH0 407 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 PDCD6IPQ8WUM4 868 aaKnown RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 KIAA1143Q96AT1 154 aaPredicted RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 AP2M1Q96CW1 435 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 EID2BQ96D98 161 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 C9orf72Q96LT7 481 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 CSPG4P5Q96PW8 444 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 PLEKHG4BQ96PX9 1271 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 LYSMD1Q96S90 227 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 TBC1D10AQ9BXI6 508 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 AKIRIN1Q9H9L7 192 aaPredicted RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 UCK1Q9HA47 277 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 MLXIPLQ9NP71 852 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 PARVAQ9NVD7 372 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 FANCLQ9NW38 375 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 SCHIP1Q9P0W5 487 aaPredicted RBP6.05□□□□□ -1.44
VRK3-220ENST00000600259 CPNE7Q9UBL6 633 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 SLC23A2Q9UGH3 650 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 ZNHIT2Q9UHR6 403 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 TLK1Q9UKI8 766 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 KCTD3Q9Y597 815 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 PCDHGA6Q9Y5G7 932 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 DOPEY1Q5JWR5 2465 aa6.05□□□□□ -1.44
VRK3-220ENST00000600259 KIR2DS5A0A0G2JLQ3 304 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 A0A0G2JNG1 304 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 ANKRD62A6NC57 917 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GOLGA6CA6NDK9 693 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GOLGA6BA6NDN3 693 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 LILRA5A6NI73 299 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 LGALS16A8MUM7 142 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 KIR2DS3K7RE56 304 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 DDX3XO00571 662 aaKnown RBP eCLIP6.04□□□□□ -1.443e-12■■□□□ 11.9
VRK3-220ENST00000600259 INPP4BO15327 924 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 PRPSAP2O60256 369 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 RNF8O76064 485 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 CLDN7O95471 211 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GOLGA6DP0CG33 693 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 RARAP10276 462 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 FGF5P12034 268 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GZMAP12544 262 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 F3P13726 295 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 ZNF30P17039 623 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 XRCC1P18887 633 aaPredicted RBP6.04□□□□□ -1.44
VRK3-220ENST00000600259 PCK1P35558 622 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 SPINT3P49223 89 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 ARSEP51690 589 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GFERP55789 205 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 SH3BP2P78314 561 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 NIPAL4Q0D2K0 466 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 ERV3-1Q14264 604 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 ZNF235Q14590 738 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 KIR2DS5Q14953 304 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 BOLA3Q53S33 107 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 HENMT1Q5T8I9 393 aaKnown RBP6.04□□□□□ -1.44
VRK3-220ENST00000600259 MARC1Q5VT66 337 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 E4F1Q66K89 784 aaPredicted RBP6.04□□□□□ -1.44
VRK3-220ENST00000600259 C6orf15Q6UXA7 325 aaPredicted RBP6.04□□□□□ -1.44
VRK3-220ENST00000600259 RBM43Q6ZSC3 357 aaKnown RBP6.04□□□□□ -1.44
VRK3-220ENST00000600259 ASB18Q6ZVZ8 466 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 USP45Q70EL2 814 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 CHST15Q7LFX5 561 aaPredicted RBP6.04□□□□□ -1.44
VRK3-220ENST00000600259 LYSMD3Q7Z3D4 306 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 KDELC2Q7Z4H8 507 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GALNT13Q8IUC8 556 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 PLXDC1Q8IUK5 500 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 CCDC13Q8IYE1 715 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 ESX1Q8N693 406 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 AOPEPQ8N6M6 819 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 TEX19Q8NA77 164 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GALNT6Q8NCL4 622 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 GALNT11Q8NCW6 608 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 NEK11Q8NG66 645 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 FAM71BQ8TC56 605 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 KLHL6Q8WZ60 621 aa6.04□□□□□ -1.44
VRK3-220ENST00000600259 MAML1Q92585 1016 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms