RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 S1PR4O95977 384 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ZNF182P17025 639 aaPredicted RBP15.19■□□□□ 0.02
UPF1-204ENST00000596842 SLC6A2P23975 617 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 DNAJB2P25686 324 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ADRA1AP35348 466 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 GSK3BP49841 420 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 MTPNP58546 118 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 IMPG1Q17R60 797 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 PAGE3Q5JUK9 113 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 PPP4R4Q6NUP7 873 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ABCC13Q9NSE7 274 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ITM2BQ9Y287 266 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 PTCH2Q9Y6C5 1203 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 AGRPO00253 132 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 IST1P53990 364 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 NUP107P57740 925 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 NRG1Q02297 640 aaPredicted RBP15.19■□□□□ 0.02
UPF1-204ENST00000596842 SGO1Q5FBB7 561 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 GNASQ5JWF2 1037 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 TMEM86AQ8N2M4 240 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 RTL3Q8N8U3 475 aaKnown RBP15.19■□□□□ 0.02
UPF1-204ENST00000596842 LZICQ8WZA0 190 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ANKRD60Q9BZ19 345 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 SLC25A51Q9H1U9 297 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ZFYVE28Q9HCC9 887 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 NPEPPSL1A6NEC2 478 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 CCDC154A6NI56 674 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 GNGT2O14610 69 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ALBP02768 609 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 GSTT2P0CG29 244 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 GSTT2BP0CG30 244 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ITGB6P18564 788 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 CD247P20963 164 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 ACVRL1P37023 503 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 LEPRP48357 1165 aaKnown RBP15.19■□□□□ 0.02
UPF1-204ENST00000596842 EMP3P54852 163 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 CTBSQ01459 385 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 BFSP2Q13515 415 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 PTPRRQ15256 657 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 RAB41Q5JT25 222 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 TBCDQ9BTW9 1192 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 C9orf16Q9BUW7 83 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 EXD2Q9NVH0 621 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 PKD2L2Q9NZM6 624 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 GALPQ9UBC7 116 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 DGKBQ9Y6T7 804 aa15.19■□□□□ 0.02
UPF1-204ENST00000596842 DOCK3Q8IZD9 2030 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 OR1E1P30953 314 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 CD52P31358 61 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 CLCQ05315 142 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 IHHQ14623 411 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 AAK1Q2M2I8 961 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 PIK3R6Q5UE93 754 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 FBXO30Q8TB52 745 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 OSBPL6Q9BZF3 934 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 TUBB1Q9H4B7 451 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 CCM2LQ9NUG4 571 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 CD274Q9NZQ7 290 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 NUP214P35658 2090 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 PTGES3LE9PB15 166 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 SYNCRIPO60506 623 aaKnown RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 LDLRP01130 860 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 GNA12Q03113 381 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 ITGADQ13349 1161 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 SEMA3AQ14563 771 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 RAB39AQ14964 217 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 AARS2Q5JTZ9 985 aaKnown RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 AGMOQ6ZNB7 445 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 OR10Q1Q8NGQ4 319 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 CAPSLQ8WWF8 208 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 RTP3Q9BQQ7 232 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 FGF10O15520 208 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 GPR39O43194 453 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 NDUFS3O75489 264 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 CDKN1CP49918 316 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 FOXD4Q12950 439 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 TRIM16LQ309B1 348 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 FAM45BPQ6NSW5 357 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 MRNIPQ6NTE8 343 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 UGT3A1Q6NUS8 523 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 SLC2A7Q6PXP3 512 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 THEM5Q8N1Q8 247 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 LZTR1Q8N653 840 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 FAM45AQ8TCE6 357 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 FIG4Q92562 907 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 PGAP3Q96FM1 320 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 CENPNQ96H22 339 aaPredicted RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 TSGA13Q96PP4 275 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 ANAPC2Q9UJX6 822 aa15.18■□□□□ 0.02
UPF1-204ENST00000596842 ZFC3H1O60293 1989 aaKnown RBP15.18■□□□□ 0.02
UPF1-204ENST00000596842 SNX2O60749 519 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 TBX4P57082 545 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 LAPTM5Q13571 262 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 POLD3Q15054 466 aaPredicted RBP15.17■□□□□ 0.02
UPF1-204ENST00000596842 C10orf120Q5SQS8 335 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 PERM1Q5SV97 790 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 ZNF549Q6P9A3 640 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 ABRAXAS1Q6UWZ7 409 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 KIAA0408Q6ZU52 694 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 UBXN10Q96LJ8 280 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms