RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TTLL2Q9BWV7 592 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 POMKQ9H5K3 350 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 FBRSQ9HAH7 460 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 INTS7Q9NVH2 962 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 GID8Q9NWU2 228 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 POLG2Q9UHN1 485 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 GMEB2Q9UKD1 530 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 FAM189A1O60320 539 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MMP20O60882 483 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 GUCY1B2O75343 617 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ESR1P03372 595 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ALPIP09923 528 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 TNNI3P19429 210 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 FBXW4P57775 412 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 TAF11Q15544 211 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 HTR3DQ70Z44 454 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 GATAD2AQ86YP4 633 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 OR52K2Q8NGK3 314 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 KCTD4Q8WVF5 259 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MAGEB18Q96M61 343 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MRPL57Q9BQC6 102 aaKnown RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 RIOK2Q9BVS4 552 aaKnown RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 RABL2AQ9UBK7 228 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 SLCO3A1Q9UIG8 710 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 C16orf96A6NNT2 1141 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 CCNDBP1O95273 360 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 EIF2S1P05198 315 aaKnown RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 CNTN1Q12860 1018 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 FOXD4Q12950 439 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 MAD2L1Q13257 205 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 SLC1A5Q15758 541 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ZNF805Q5CZA5 627 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 HECTD2Q5U5R9 776 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 DPY19L3Q6ZPD9 716 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 LYSMD3Q7Z3D4 306 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 GPR149Q86SP6 731 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MCCC1Q96RQ3 725 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 CEP44Q9C0F1 390 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 EPN3Q9H201 632 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 OR2AG1Q9H205 316 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 AGRPO00253 132 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 EPOP01588 193 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ACTR1BP42025 376 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ARHGDIAP52565 204 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ACTR1AP61163 376 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MRPS15P82914 257 aaKnown RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 ACSM2AQ08AH3 577 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 OVGP1Q12889 678 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 TERF2Q15554 542 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ACSM2BQ68CK6 577 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 C16orf46Q6P387 395 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 AMZ2Q86W34 360 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 TRIML2Q8N7C3 387 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 RERGQ96A58 199 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 PRICKLE1Q96MT3 831 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 CARS2Q9HA77 564 aaKnown RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 DNAJC28Q9NX36 388 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 TTC24A2A3L6 582 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 URADA6NGE7 173 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 BMP10O95393 424 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 NMBRP28336 390 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 LSP1P33241 339 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 RRM2BQ7LG56 351 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 LDB1Q86U70 411 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 CPXM2Q8N436 756 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 UBR7Q8N806 425 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 TERB1Q8NA31 727 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MYLIPQ8WY64 445 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 JADE3Q92613 823 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 CMTM5Q96DZ9 223 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 MAGEB10Q96LZ2 347 aaPredicted RBP9.79□□□□□ -0.84
LIG3-216ENST00000593099 LMAN1LQ9HAT1 526 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 LRRC4CQ9HCJ2 640 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 BATF3Q9NR55 127 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 SNX15Q9NRS6 342 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 RHBDL2Q9NX52 303 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 CYP8B1Q9UNU6 501 aa9.79□□□□□ -0.84
LIG3-216ENST00000593099 ARFGEF1Q9Y6D6 1849 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 NEMP2A6NFY4 417 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SOBPA7XYQ1 873 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 LEFTY1O75610 366 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 ENO1P06733 434 aaKnown RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 ARSAP15289 507 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 RCN1Q15293 331 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 ATP6AP1LQ52LC2 224 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 RAB41Q5JT25 222 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SIRPB2Q5JXA9 342 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 FOXR1Q6PIV2 292 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 KDM7AQ6ZMT4 941 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 PAQR9Q6ZVX9 377 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 GPR135Q8IZ08 494 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 HIPK4Q8NE63 616 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 CLP1Q92989 425 aaKnown RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 CCT8L2Q96SF2 557 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 GPR21Q99679 349 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 UBE2ZQ9H832 354 aaPredicted RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 RMND5AQ9H871 391 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 CAPN10Q9HC96 672 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 ANLNQ9NQW6 1124 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms