RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 UBP1Q9NZI7 540 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 RABGEF1Q9UJ41 708 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 EFR3BQ9Y2G0 817 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 ZNF711Q9Y462 761 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 PCDHGA8Q9Y5G5 932 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 DUSP10Q9Y6W6 482 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 ZFYVE26Q68DK2 2539 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 RP1P56715 2156 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 RCCD1A6NED2 376 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 PJA2O43164 708 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 ZNF189O75820 626 aaPredicted RBP12.28□□□□□ -0.44
SS18-225ENST00000585121 STK10O94804 968 aaKnown RBP12.28□□□□□ -0.44
SS18-225ENST00000585121 ECEL1O95672 775 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 PIRTP0C851 137 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 CDC25BP30305 580 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 MLLT3P42568 568 aaPredicted RBP12.28□□□□□ -0.44
SS18-225ENST00000585121 MAZP56270 477 aaKnown RBP12.28□□□□□ -0.44
SS18-225ENST00000585121 WNT3AP56704 352 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 ADCY2Q08462 1091 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 CCDC173Q0VFZ6 552 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 WASHC5Q12768 1159 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 EIF3IQ13347 325 aaKnown RBP12.28□□□□□ -0.44
SS18-225ENST00000585121 FAM182AQ5T1J6 154 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 PDPK2PQ6A1A2 396 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 IGF2-ASQ6U949 168 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 TMC3Q7Z5M5 1100 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 SPRED1Q7Z699 444 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 SYCE1Q8N0S2 351 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 ACRBPQ8NEB7 543 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 LIN37Q96GY3 246 aaPredicted RBP12.28□□□□□ -0.44
SS18-225ENST00000585121 FCRL5Q96RD9 977 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 WDR24Q96S15 920 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 OSBPL8Q9BZF1 889 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 TRABDQ9H4I3 376 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 AMFRQ9UKV5 643 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 CELSR3Q9NYQ7 3312 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 MYLKQ15746 1914 aa12.28□□□□□ -0.44
SS18-225ENST00000585121 A0A1W2PQM1 296 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 TJP3O95049 919 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 SLC25A14O95258 325 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 EPOP01588 193 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 ATP1A1P05023 1023 aaKnown RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 ALDH4A1P30038 563 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 CD68P34810 354 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 GPR3P46089 330 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 DCDC1P59894 354 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 MPP3Q13368 585 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 MAP9Q49MG5 647 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 BROXQ5VW32 411 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 ZDHHC20Q5W0Z9 365 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 ALS2CLQ60I27 953 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 ITPRIPL1Q6GPH6 555 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 CHST15Q7LFX5 561 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 PEX26Q7Z412 305 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 PDZD3Q86UT5 571 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 C17orf82Q86X59 251 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 CDKL3Q8IVW4 592 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 ZNF567Q8N184 647 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 FBXO39Q8N4B4 442 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 TRAM1L1Q8N609 369 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 UBL4BQ8N7F7 174 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 SPC24Q8NBT2 197 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 PTCD2Q8WV60 388 aaKnown RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 CCDC97Q96F63 343 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 SLC46A1Q96NT5 459 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 LACRTQ9GZZ8 138 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 CARD9Q9H257 536 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 STN1Q9H668 368 aaKnown RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 HACD3Q9P035 362 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 AKAP7Q9P0M2 348 aaPredicted RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 RSPH14Q9UHP6 348 aa12.27□□□□□ -0.44
SS18-225ENST00000585121 CNOT6Q9ULM6 557 aaKnown RBP12.27□□□□□ -0.44
SS18-225ENST00000585121 GOLGA6L9A6NEM1 432 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 FADS2P1A8MWK0 482 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 PLD2O14939 933 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 ANXA9O76027 345 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 TNFSF15O95150 251 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 SLC2A4P14672 509 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 HLA-DPA1P20036 260 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 CCKBRP32239 447 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 PTPN7P35236 360 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 PPM1FP49593 454 aaPredicted RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 GEMP55040 296 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 B4GALNT1Q00973 533 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 OTUD4Q01804 1114 aaKnown RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 PRPSAP1Q14558 356 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 NOMO1Q15155 1222 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 CLPPQ16740 277 aaPredicted RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 AMZ1Q400G9 498 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 DARS2Q6PI48 645 aaKnown RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 RAB11FIP2Q7L804 512 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 PIM3Q86V86 326 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 PHYKPLQ8IUZ5 450 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 SFTPA2Q8IWL1 248 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 SLC25A41Q8N5S1 370 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 IPMKQ8NFU5 416 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 TMEM159Q96B96 161 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 LRRC45Q96CN5 670 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 NAF1Q96HR8 494 aaKnown RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 FSD1LQ9BXM9 530 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms