RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 FAM149B1Q96BN6 582 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PTERQ96BW5 349 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 R3HDM4Q96D70 268 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZC3HAV1LQ96H79 300 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PUS3Q9BZE2 481 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 FOXP1Q9H334 677 aaPredicted RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 CDCP1Q9H5V8 836 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 BRF2Q9HAW0 419 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ERVK-5Q9HDB9 667 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 VSX1Q9NZR4 365 aaPredicted RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 MGAT4CQ9UBM8 478 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SEL1LQ9UBV2 794 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 GTF3C4Q9UKN8 822 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SARDHQ9UL12 918 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 NDRG4Q9ULP0 352 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 FAM96BQ9Y3D0 163 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PATJQ8NI35 1801 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SYCE3A1L190 88 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 C3orf70A6NLC5 250 aaPredicted RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 IFIT3O14879 490 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PRPF4O43172 522 aaKnown RBP eCLIP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 KIF1CO43896 1103 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SPDEFO95238 335 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SYF2O95926 243 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZFXP17010 805 aaPredicted RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 UQCRC1P31930 480 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC8A1P32418 973 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 AP3M2P53677 418 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PNLIPRP1P54315 467 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 NLRP5P59047 1200 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 TIMM10P62072 90 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PDIA5Q14554 519 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 NAB2Q15742 525 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 KRTAP15-1Q3LI76 137 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 Q4G0T1 1027 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 IGSF11Q5DX21 431 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 MTX3Q5HYI7 312 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 NOMO2Q5JPE7 1267 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 VWA1Q6PCB0 445 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 RASGRP2Q7LDG7 609 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC46A3Q7Z3Q1 461 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SZRD1Q7Z422 152 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PXKQ7Z7A4 578 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 CAND1Q86VP6 1230 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF280BQ86YH2 543 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ADHFE1Q8IWW8 467 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 UEVLDQ8IX04 471 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ADSSL1Q8N142 457 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 OR8H3Q8N146 312 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 NDUFAF2Q8N183 169 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 LSM14AQ8ND56 463 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 MBD3L2Q8NHZ7 208 aaPredicted RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 STT3BQ8TCJ2 826 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 FAM136AQ96C01 138 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZDHHC12Q96GR4 267 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 DEFB118Q96PH6 123 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 THUMPD3Q9BV44 507 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 MRPL9Q9BYD2 267 aaKnown RBP1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 NFKBIZQ9BYH8 718 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 BOLA2Q9H3K6 86 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 CXorf36Q9H7Y0 433 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 TUFT1Q9NNX1 390 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 SMYD2Q9NRG4 433 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 THAP1Q9NVV9 213 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 FBXO34Q9NWN3 711 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 AATFQ9NY61 560 aaKnown RBP eCLIP1.97□□□□□ -2.092e-8■■■■□ 22.6
SMCHD1-211ENST00000584897 MPP6Q9NZW5 540 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PEMTQ9UBM1 199 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 TNFSF13BQ9Y275 285 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 EXOC6BQ9Y2D4 811 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF711Q9Y462 761 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 POMT1Q9Y6A1 747 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 ZHX2Q9Y6X8 837 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 PARP14Q460N5 1801 aa1.97□□□□□ -2.09
SMCHD1-211ENST00000584897 MYH4Q9Y623 1939 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 GRIN2DO15399 1336 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 SIPA1L1O43166 1804 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 ARHGAP10A1A4S6 786 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 FAM90A10PA6NDY2 464 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 TMEM221A6NGB7 291 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 LRRC72A6NJI9 287 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 AHRRA9YTQ3 701 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 TCP10L2B9ZVM9 353 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 F5H6K3 240 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 M0R296 226 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 VWA5AO00534 786 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 PPP6CO00743 305 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 SH2B2O14492 632 aaPredicted RBP1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 TMPRSS11DO60235 418 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 STX10O60499 249 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 PFKFB2O60825 505 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 SLC25A12O75746 678 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 FAM155BO75949 473 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 SLC2A4P14672 509 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 LIPAP38571 399 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 PNPLA4P41247 253 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 DPP6P42658 865 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 PSMC4P43686 418 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 MFAP4P55083 255 aa1.96□□□□□ -2.1
SMCHD1-211ENST00000584897 HSF1Q00613 529 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms