RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LOC102723996A0A087X1L8 192 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 PRAMEF33A0A0G2JMD5 474 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 TTC36A6NLP5 189 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 PSMD9O00233 223 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ZNF263O14978 683 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 SPRY1O43609 319 aaPredicted RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 PRAMEF10O60809 474 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 AVILO75366 819 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 SEC22BO75396 215 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 GPANK1O95872 356 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 OLFM2O95897 454 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 SRPRAP08240 638 aaKnown RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 PKMP14618 531 aaKnown RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 IL7RP16871 459 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ZNF37AP17032 561 aaPredicted RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 ADRA1DP25100 572 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 PON1P27169 355 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 GJC1P36383 396 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 CCR3P51677 355 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 BMXP51813 675 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 CAPZA1P52907 286 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 PNLIPRP2P54317 469 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 FKBP1AP62942 108 aaKnown RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 OCA2Q04671 838 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 TUBB2AQ13885 445 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 C15orf59Q2T9L4 293 aaPredicted RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 COLEC12Q5KU26 742 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 FAM102AQ5T9C2 384 aaPredicted RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 METRNLQ641Q3 311 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 FOXR2Q6PJQ5 311 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ABRAXAS1Q6UWZ7 409 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ERN2Q76MJ5 926 aaKnown RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 GPAT4Q86UL3 456 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 PEX5LQ8IYB4 626 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ZNF843Q8N446 348 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 TC2NQ8N9U0 490 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 SMRP1Q8NCR6 262 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 SETD9Q8NE22 299 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 SPATA20Q8TB22 786 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 N4BP2L2Q92802 583 aaPredicted RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 MIEF2Q96C03 454 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 R3HDM4Q96D70 268 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 RPGRIP1Q96KN7 1286 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 CFAP57Q96MR6 1250 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 MGME1Q9BQP7 344 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 TUBB2BQ9BVA1 445 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ACTRT3Q9BYD9 372 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 WDR11Q9BZH6 1224 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 TPSD1Q9BZJ3 242 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 PORCNQ9H237 461 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 HIPK3Q9H422 1215 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 USP29Q9HBJ7 922 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 GLOD4Q9HC38 313 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 TXNRD2Q9NNW7 524 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ABI3Q9P2A4 366 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 CNOT8Q9UFF9 292 aaKnown RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 TRMT112Q9UI30 125 aaKnown RBP5.87□□□□□ -1.47
VPS53-219ENST00000576019 BTBD3Q9Y2F9 522 aa5.87□□□□□ -1.47
VPS53-219ENST00000576019 ATG2AQ2TAZ0 1938 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 ROCK2O75116 1388 aaKnown RBP5.86□□□□□ -1.47
VPS53-219ENST00000576019 ELP1O95163 1332 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 A0A1W2PRG0 241 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 LRRD1A4D1F6 860 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 LINC01553A4QN01 128 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 LEFTY2O00292 366 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 TXNL1O43396 289 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 MITFO75030 526 aaPredicted RBP5.86□□□□□ -1.47
VPS53-219ENST00000576019 PNPP00491 289 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 CREB1P16220 341 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 IGFBP2P18065 325 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 SPINK2P20155 84 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 AGAP20933 346 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 GSTM2P28161 218 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 ACLYP53396 1101 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 LIMK1P53667 647 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 CCL23P55773 120 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 NHLH2Q02577 135 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 RALGDSQ12967 914 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 DNASE1L3Q13609 305 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 ITGA7Q13683 1181 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 MEP1BQ16820 701 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 HMBOX1Q6NT76 420 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 PPP1R21Q6ZMI0 780 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 MICALCLQ6ZW33 695 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 GSTA5Q7RTV2 222 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 CAMKMTQ7Z624 323 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 SIRT6Q8N6T7 355 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 IQUBQ8NA54 791 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 CAMKVQ8NCB2 501 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 DNAAF1Q8NEP3 725 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 GPRC5AQ8NFJ5 357 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 TEKT4Q8WW24 435 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 CORO2AQ92828 525 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 DCLRE1CQ96SD1 692 aaKnown RBP5.86□□□□□ -1.47
VPS53-219ENST00000576019 OSBPL9Q96SU4 736 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 SLC25A23Q9BV35 468 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 SGPP1Q9BX95 441 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 OSGEPL1Q9H4B0 414 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 INTS10Q9NVR2 710 aaKnown RBP5.86□□□□□ -1.47
VPS53-219ENST00000576019 PLK2Q9NYY3 685 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms