RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MFSD2AQ8NA29 543 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 STYXQ8WUJ0 223 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SNX19Q92543 992 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 ATOH1Q92858 354 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 TCEAL3Q969E4 200 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 HDAC10Q969S8 669 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SCARF2Q96GP6 870 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 SGSM3Q96HU1 749 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 FRMD8Q9BZ67 464 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 PHACTR1Q9C0D0 580 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 ARRDC1-AS1Q9H2J1 176 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 EPB41L4BQ9H329 900 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SEMA4AQ9H3S1 761 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 FGF22Q9HCT0 170 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 PKD2L2Q9NZM6 624 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 IL1RAPL1Q9NZN1 696 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 BFARQ9NZS9 450 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.23□□□□□ -0.93
VPS35-211ENST00000569950 OR1A2Q9Y585 309 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 V9GYY5 206 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 CNOT1A5YKK6 2376 aaKnown RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 DCHS1Q96JQ0 3298 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 ASXL3Q9C0F0 2248 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 GLYATL1P3A0A0U1RQE8 302 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 A0A1B0GTW7 788 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 A0A1B0GVT2 93 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 C2orf81A6NN90 581 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 VILLO15195 856 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 BCAT2O15382 392 aaPredicted RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 SRP72O76094 671 aaKnown RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 PRAMEF1O95521 474 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 GOT2P00505 430 aaKnown RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 PCCBP05166 539 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 CEACAM5P06731 702 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 RETP07949 1114 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 TSHRP16473 764 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 NFKBIAP25963 317 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 CD38P28907 300 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 TNFRSF8P28908 595 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 AKT2P31751 481 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 MC4RP32245 332 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 HOXD12P35452 270 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 MPLP40238 635 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 NXPH1P58417 271 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 KIAA1024LP59773 190 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 VSNL1P62760 191 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 CDK3Q00526 305 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 PDIA2Q13087 525 aaKnown RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 EIF2B5Q13144 721 aaKnown RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 NFATC2Q13469 925 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 PDE1CQ14123 709 aaPredicted RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 CRYMQ14894 314 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 ERCC6LQ2NKX8 1250 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 KIF19Q2TAC6 998 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 ZNF658BQ4V348 819 aaPredicted RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 KIAA0930Q6ICG6 404 aaPredicted RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 SLC23A3Q6PIS1 610 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 Q6ZSR6 202 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 ASCL5Q7RTU5 278 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 KANSL1Q7Z3B3 1105 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 IQCHQ86VS3 1027 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 RELL1Q8IUW5 271 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 DCLK2Q8N568 766 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 PAF1Q8N7H5 531 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 BBOF1Q8ND07 529 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 PPHLN1Q8NEY8 458 aaKnown RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 NAT14Q8WUY8 206 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 OR1E3Q8WZA6 343 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 PIGKQ92643 395 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 STAMBPL1Q96FJ0 436 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 VPS35Q96QK1 796 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 MCMBPQ9BTE3 642 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 APOOQ9BUR5 198 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 CDH19Q9H159 772 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 MIR1-1HGQ9H1L0 117 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 TCEAL2Q9H3H9 227 aaPredicted RBP9.22□□□□□ -0.93
VPS35-211ENST00000569950 FAM96AQ9H5X1 160 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 ARFGAP3Q9NP61 516 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 SMYD2Q9NRG4 433 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 FAM114A2Q9NRY5 505 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 RXFP3Q9NSD7 469 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 SLC17A6Q9P2U8 582 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 GULP1Q9UBP9 304 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 NFU1Q9UMS0 254 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 CHMP2BQ9UQN3 213 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 SLC17A4Q9Y2C5 497 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 PCDHGA5Q9Y5G8 931 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 FAM169AQ9Y6X4 670 aa9.22□□□□□ -0.93
VPS35-211ENST00000569950 SPTY2D1-AS1A0A0U1RR47 76 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 A6NNZ2 444 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 GOLGA8KD6RF30 607 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 GOLGA8TH3BQL2 631 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 AP3B1O00203 1094 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 TLR4O00206 839 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 FPGTO14772 594 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 EIF3HO15372 352 aaKnown RBP eCLIP9.21□□□□□ -0.94
VPS35-211ENST00000569950 DNAJC6O75061 913 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 USP1O94782 785 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 THEGLP0DJG4 465 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 MYCLP1P12525 358 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms