RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PLEKHM1Q9Y4G2 1056 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 OAS3Q9Y6K5 1087 aaKnown RBP14.94□□□□□ -0.02
VPS39-210ENST00000568357 AGTP01019 485 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 SLC4A1P02730 911 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 ATP1A1P05023 1023 aaKnown RBP14.93□□□□□ -0.02
VPS39-210ENST00000568357 IVLP07476 585 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 ADCY8P40145 1251 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 MPP3Q13368 585 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 SLC1A5Q15758 541 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 ALS2CLQ60I27 953 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 MARK2Q7KZI7 788 aaKnown RBP14.93□□□□□ -0.02
VPS39-210ENST00000568357 PDCD7Q8N8D1 485 aaKnown RBP14.93□□□□□ -0.02
VPS39-210ENST00000568357 GPR156Q8NFN8 814 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 CCDC110Q8TBZ0 833 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 MAPK15Q8TD08 544 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 GBA3Q9H227 469 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 LZTFL1Q9NQ48 299 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 TRNAU1APQ9NX07 287 aaKnown RBP14.93□□□□□ -0.02
VPS39-210ENST00000568357 RABGEF1Q9UJ41 708 aa14.93□□□□□ -0.02
VPS39-210ENST00000568357 R3HDM2Q9Y2K5 976 aaKnown RBP14.93□□□□□ -0.02
VPS39-210ENST00000568357 PCYT1BQ9Y5K3 369 aaPredicted RBP14.93□□□□□ -0.02
VPS39-210ENST00000568357 NOBOXO60393 691 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 FGF1P05230 155 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 PTMAP06454 111 aaKnown RBP14.92□□□□□ -0.02
VPS39-210ENST00000568357 BPIP17213 487 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 AK4P27144 223 aaPredicted RBP14.92□□□□□ -0.02
VPS39-210ENST00000568357 CTBSQ01459 385 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 CYP4F3Q08477 520 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 PYCR3Q53H96 274 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 ZNF662Q6ZS27 426 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 SPATA13Q96N96 652 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 SRPK1Q96SB4 655 aaKnown RBP14.92□□□□□ -0.02
VPS39-210ENST00000568357 SPATA16Q9BXB7 569 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 DPEP2Q9H4A9 486 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 GRPEL1Q9HAV7 217 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 BPIFA1Q9NP55 256 aa14.92□□□□□ -0.02
VPS39-210ENST00000568357 TENM4Q6N022 2769 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 GOLGA6L9A6NEM1 432 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 B4DGG1 531 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 DNAJC6O75061 913 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ANXA9O76027 345 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ASMTLO95671 621 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 CCDC175P0C221 793 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 PLA2G2AP14555 144 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 PSMB4P28070 264 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ADRA1AP35348 466 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 HMGCLP35914 325 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 GEMP55040 296 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ILF3Q12906 894 aaKnown RBP eCLIP14.91□□□□□ -0.02
VPS39-210ENST00000568357 OLIG2Q13516 323 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ZNF648Q5T619 568 aaPredicted RBP14.91□□□□□ -0.02
VPS39-210ENST00000568357 MEI1Q5TIA1 1274 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ITPRIPL1Q6GPH6 555 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 RANBP10Q6VN20 620 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 TTC30BQ8N4P2 665 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 FAM71DQ8N9W8 422 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 TTC13Q8NBP0 860 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 SLC35B2Q8TB61 432 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 NAT6Q93015 286 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 CCDC74AQ96AQ1 378 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 CCDC3Q9BQI4 270 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 FERMT1Q9BQL6 677 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 FICDQ9BVA6 458 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 GSDMCQ9BYG8 508 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 ARFGAP3Q9NP61 516 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 TAAR2Q9P1P5 351 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 PRKAB1Q9Y478 270 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 PCDHB1Q9Y5F3 818 aa14.91□□□□□ -0.02
VPS39-210ENST00000568357 C5orf60A6NFR6 353 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 STK10O94804 968 aaKnown RBP14.9□□□□□ -0.02
VPS39-210ENST00000568357 HLA-DPA1P20036 260 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 DCDC1P59894 354 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 HLTFQ14527 1009 aaKnown RBP eCLIP14.9□□□□□ -0.02
VPS39-210ENST00000568357 SLC30A9Q6PML9 568 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 TRAM1L1Q8N609 369 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 BLOC1S5Q8TDH9 187 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 OR2M4Q96R27 311 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 UBL7Q96S82 380 aaPredicted RBP14.9□□□□□ -0.02
VPS39-210ENST00000568357 APOL2Q9BQE5 337 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 FSD1LQ9BXM9 530 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 CDH19Q9H159 772 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 TRABDQ9H4I3 376 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 RAD18Q9NS91 495 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 IL17CQ9P0M4 197 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 VPS18Q9P253 973 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 NFKBIL1Q9UBC1 381 aaPredicted RBP14.9□□□□□ -0.02
VPS39-210ENST00000568357 ZNHIT2Q9UHR6 403 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 TMPRSS11EQ9UL52 423 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 AAR2Q9Y312 384 aaKnown RBP14.9□□□□□ -0.02
VPS39-210ENST00000568357 LRP4O75096 1905 aa14.9□□□□□ -0.02
VPS39-210ENST00000568357 BUD23O43709 281 aaKnown RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 CSO75390 466 aaKnown RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 SLC25A14O95258 325 aaPredicted RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 TNNT3P45378 269 aaPredicted RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 GDF10P55107 478 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 CCL7P80098 99 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 MSLNQ13421 630 aaPredicted RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 SPARCL1Q14515 664 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 PRPSAP1Q14558 356 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 PTPRCAPQ14761 206 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms