RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 AGRPO00253 132 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 PLD2O14939 933 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 NDST3O95803 873 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 SLC4A1P02730 911 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 MARCKSL1P49006 195 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 TLE3Q04726 772 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 EIF3IQ13347 325 aaKnown RBP20.57■□□□□ 0.88
CLN3-219ENST00000565778 USP53Q70EK8 1073 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 TMC3Q7Z5M5 1100 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 PIM3Q86V86 326 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 NAGSQ8N159 534 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 KCNE4Q8WWG9 221 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 KRT35Q92764 455 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 EID2BQ96D98 161 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 RAD18Q9NS91 495 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 VPS18Q9P253 973 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 OAS3Q9Y6K5 1087 aaKnown RBP20.57■□□□□ 0.88
CLN3-219ENST00000565778 KLK10O43240 276 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 DNAJC6O75061 913 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 HOXB3P14651 431 aaPredicted RBP20.56■□□□□ 0.88
CLN3-219ENST00000565778 CCKBRP32239 447 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 UGT1A5P35504 534 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 TNNT3P45378 269 aaPredicted RBP20.56■□□□□ 0.88
CLN3-219ENST00000565778 WASHC5Q12768 1159 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 LRP8Q14114 963 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 SLC14A2Q15849 920 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 CCDC181Q5TID7 509 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 ALS2CLQ60I27 953 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 GPR26Q8NDV2 337 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 CCDC97Q96F63 343 aaPredicted RBP20.56■□□□□ 0.88
CLN3-219ENST00000565778 CALR3Q96L12 384 aaKnown RBP20.56■□□□□ 0.88
CLN3-219ENST00000565778 SRPK1Q96SB4 655 aaKnown RBP20.56■□□□□ 0.88
CLN3-219ENST00000565778 DPH1Q9BZG8 443 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 PRORYQ9H606 182 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 RDH14Q9HBH5 336 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 KLHL8Q9P2G9 620 aaPredicted RBP20.56■□□□□ 0.88
CLN3-219ENST00000565778 FAM153AQ9UHL3 310 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 ZNF711Q9Y462 761 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 DUSP10Q9Y6W6 482 aa20.56■□□□□ 0.88
CLN3-219ENST00000565778 ITPR1Q14643 2758 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 RCCD1A6NED2 376 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 CDRT15L2A8MXV6 281 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 PPM1DO15297 605 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 SLC25A14O95258 325 aaPredicted RBP20.55■□□□□ 0.88
CLN3-219ENST00000565778 ITGA2BP08514 1039 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 JMJD7P0C870 316 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 NFKB1P19838 968 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 CD68P34810 354 aaPredicted RBP20.55■□□□□ 0.88
CLN3-219ENST00000565778 MLLT3P42568 568 aaPredicted RBP20.55■□□□□ 0.88
CLN3-219ENST00000565778 GPR3P46089 330 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 ZFP36L1Q07352 338 aaKnown RBP20.55■□□□□ 0.88
CLN3-219ENST00000565778 MAP9Q49MG5 647 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 PHF19Q5T6S3 580 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 JAMLQ86YT9 394 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 HTR3CQ8WXA8 447 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 FCRL3Q96P31 734 aaPredicted RBP20.55■□□□□ 0.88
CLN3-219ENST00000565778 VAT1Q99536 393 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 RMI1Q9H9A7 625 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 ARFGAP3Q9NP61 516 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 PCDHA3Q9Y5H8 950 aa20.55■□□□□ 0.88
CLN3-219ENST00000565778 HACD1B0YJ81 288 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 F5H423 210 aaPredicted RBP20.54■□□□□ 0.88
CLN3-219ENST00000565778 H7C0C1 242 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 CPNE6O95741 557 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 HGFP14210 728 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 ATP5OP48047 213 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 WNT3AP56704 352 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 COPS2P61201 443 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 CXADRP78310 365 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 SOWAHCQ53LP3 525 aaPredicted RBP20.54■□□□□ 0.88
CLN3-219ENST00000565778 TMPRSS9Q7Z410 1059 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 ZNF438Q7Z4V0 828 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 GAS2L3Q86XJ1 694 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 ZNF567Q8N184 647 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 CMKLR1Q99788 373 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 ZSCAN5AQ9BUG6 496 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 SEMA6CQ9H3T2 930 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 WDR70Q9NW82 654 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 PISDQ9UG56 409 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 LOXL2Q9Y4K0 774 aa20.54■□□□□ 0.88
CLN3-219ENST00000565778 PCYT1BQ9Y5K3 369 aaPredicted RBP20.54■□□□□ 0.88
CLN3-219ENST00000565778 COL27A1Q8IZC6 1860 aaPredicted RBP20.54■□□□□ 0.88
CLN3-219ENST00000565778 ZFYVE26Q68DK2 2539 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 GRID2O43424 1007 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 FECHP22830 423 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 CD1CP29017 333 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 PPM1FP49593 454 aaPredicted RBP20.53■□□□□ 0.88
CLN3-219ENST00000565778 PPP2R5EQ16537 467 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 ZNF569Q5MCW4 686 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 ZNF648Q5T619 568 aaPredicted RBP20.53■□□□□ 0.88
CLN3-219ENST00000565778 RAD9BQ6WBX8 426 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 BBS12Q6ZW61 710 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 GPR155Q7Z3F1 870 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 CLEC14AQ86T13 490 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 SLC25A41Q8N5S1 370 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 TRAM1L1Q8N609 369 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 TMEM159Q96B96 161 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 FCRL5Q96RD9 977 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 OR2AG1Q9H205 316 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 CARD9Q9H257 536 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms